Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   A7A1_RS08040 Genome accession   NC_019896
Coordinates   1560051..1560668 (+) Length   205 a.a.
NCBI ID   WP_004398514.1    Uniprot ID   A0AAE2SLR2
Organism   Bacillus subtilis subsp. subtilis str. BSP1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1555051..1565668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A1_RS08005 (A7A1_0863) aroE 1555709..1556551 (+) 843 WP_003229967.1 shikimate dehydrogenase -
  A7A1_RS08010 (A7A1_0864) yhbY 1556545..1556835 (+) 291 WP_003226133.1 ribosome assembly RNA-binding protein YhbY -
  A7A1_RS08015 (A7A1_0865) nadD 1556847..1557416 (+) 570 WP_004398676.1 nicotinate-nucleotide adenylyltransferase -
  A7A1_RS08020 (A7A1_0866) yqeK 1557406..1557966 (+) 561 WP_004399059.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  A7A1_RS08025 (A7A1_0867) rsfS 1557984..1558340 (+) 357 WP_003229971.1 ribosome silencing factor -
  A7A1_RS08030 (A7A1_0868) yqeM 1558337..1559080 (+) 744 WP_003229973.1 class I SAM-dependent methyltransferase -
  A7A1_RS08035 (A7A1_0869) comER 1559146..1559967 (-) 822 WP_004398597.1 late competence protein ComER -
  A7A1_RS08040 (A7A1_0870) comEA 1560051..1560668 (+) 618 WP_004398514.1 competence protein ComEA Machinery gene
  A7A1_RS08045 (A7A1_0871) comEB 1560735..1561304 (+) 570 WP_003229978.1 ComE operon protein 2 -
  A7A1_RS08050 (A7A1_0872) comEC 1561308..1563638 (+) 2331 WP_015251673.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A7A1_RS08055 yqzM 1563678..1563812 (-) 135 WP_003229983.1 YqzM family protein -
  A7A1_RS21560 - 1563853..1564002 (+) 150 WP_003229985.1 hypothetical protein -
  A7A1_RS08060 (A7A1_0873) holA 1564042..1565085 (+) 1044 WP_015251674.1 DNA polymerase III subunit delta -
  A7A1_RS08065 (A7A1_0874) rpsT 1565100..1565366 (-) 267 WP_003229989.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21769.45 Da        Isoelectric Point: 4.7220

>NTDB_id=55229 A7A1_RS08040 WP_004398514.1 1560051..1560668(+) (comEA) [Bacillus subtilis subsp. subtilis str. BSP1]
MNWLNQHKKAIILAASAAVFTAIMIFLATGKNKEPVKQAVPTETENTVVKQEANNDESNETIVIDIKGAVQHPGVYEMRT
GDRVSQAIEKAGGTSEQADEAQVNLAEILQDGTVVYIPKKGEETAVQQGGGGSVQSDGGKGALVNINTATLEELQGISGV
GPSKAEAIIAYREENGRFQTIEDITKVSGIGEKSFEKIKSSITVK

Nucleotide


Download         Length: 618 bp        

>NTDB_id=55229 A7A1_RS08040 WP_004398514.1 1560051..1560668(+) (comEA) [Bacillus subtilis subsp. subtilis str. BSP1]
ATGAATTGGTTGAATCAGCATAAGAAAGCAATTATTTTAGCGGCTTCTGCGGCTGTTTTCACAGCGATTATGATCTTTCT
GGCCACAGGGAAAAATAAAGAGCCGGTGAAGCAAGCTGTACCAACAGAGACAGAAAATACAGTGGTAAAGCAGGAAGCAA
ACAACGACGAGTCAAACGAAACAATTGTGATAGACATCAAAGGTGCTGTTCAGCATCCTGGCGTTTATGAAATGCGAACA
GGGGACAGAGTATCTCAGGCAATTGAGAAAGCGGGCGGGACCAGTGAACAAGCAGACGAAGCGCAAGTAAATTTGGCGGA
GATTCTGCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGAGGAAACAGCAGTGCAGCAAGGTGGCGGAGGGTCTG
TCCAAAGCGATGGAGGGAAGGGAGCGCTGGTGAATATCAATACAGCAACCTTAGAGGAGTTACAAGGCATCTCAGGGGTG
GGGCCATCCAAAGCTGAAGCTATTATTGCATACCGGGAGGAAAACGGTCGTTTCCAAACAATTGAAGATATCACTAAGGT
TTCAGGAATAGGTGAAAAGTCATTTGAGAAAATAAAGTCTTCCATTACAGTAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(142-203)

SLBB domain (SLBB)

(63-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comEA Staphylococcus aureus MW2

37.273

100

0.4
  comEA Staphylococcus aureus N315

36.364

100

0.39

Multiple sequence alignment