Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   J4863_RS09150 Genome accession   NZ_CP072378
Coordinates   2022883..2023587 (-) Length   234 a.a.
NCBI ID   WP_211618416.1    Uniprot ID   -
Organism   Leptotrichia sp. oral taxon 221 strain F0705     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2017883..2028587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4863_RS09125 (J4863_09125) - 2018240..2018977 (+) 738 WP_211618411.1 phosphatase PAP2 family protein -
  J4863_RS09130 (J4863_09130) - 2019079..2019291 (+) 213 WP_211618412.1 hypothetical protein -
  J4863_RS09135 (J4863_09135) - 2019375..2019530 (-) 156 WP_211618413.1 hypothetical protein -
  J4863_RS09140 (J4863_09140) - 2019620..2020966 (-) 1347 WP_211618414.1 sodium:alanine symporter family protein -
  J4863_RS09145 (J4863_09145) - 2021481..2022881 (-) 1401 WP_211618415.1 sensor histidine kinase KdpD -
  J4863_RS09150 (J4863_09150) scnR 2022883..2023587 (-) 705 WP_211618416.1 response regulator transcription factor Regulator
  J4863_RS09155 (J4863_09155) - 2023779..2024117 (+) 339 WP_211618417.1 hypothetical protein -
  J4863_RS09160 (J4863_09160) - 2024276..2024770 (-) 495 WP_211618418.1 HRDC domain-containing protein -
  J4863_RS09165 (J4863_09165) pheT 2024841..2027240 (-) 2400 WP_211619369.1 phenylalanine--tRNA ligase subunit beta -
  J4863_RS09170 (J4863_09170) - 2027353..2028216 (-) 864 WP_211618419.1 YwqG family protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26922.19 Da        Isoelectric Point: 5.1247

>NTDB_id=552223 J4863_RS09150 WP_211618416.1 2022883..2023587(-) (scnR) [Leptotrichia sp. oral taxon 221 strain F0705]
MVEKYLRDKCILIVDDEQEILNMVVSILEDGGYENTRTARNVKEALKCVEEKKPDFVILDVMLPDGNGFELLEKLRKDSN
YPILFLTARGEDEDKFKGFGLGADDYIVKPFLPKELLFRITAILRRTYKEENFIVNLNGCQIDFSRGEIVKDGEKISLTA
KEYELLKTLYRDAGRIVTIDSLCEAIWGENAYVYSNSLMTHIRRIREKIEKEPSHPVSLITMKGLGYKLIVEGK

Nucleotide


Download         Length: 705 bp        

>NTDB_id=552223 J4863_RS09150 WP_211618416.1 2022883..2023587(-) (scnR) [Leptotrichia sp. oral taxon 221 strain F0705]
ATGGTTGAAAAATATTTGAGAGATAAATGTATTTTAATTGTGGATGATGAGCAGGAAATTTTGAATATGGTTGTGTCGAT
TTTGGAAGATGGAGGTTATGAAAATACAAGGACTGCTAGAAATGTGAAAGAGGCTTTAAAATGTGTTGAAGAAAAGAAAC
CTGATTTTGTGATATTGGATGTGATGCTTCCAGATGGGAATGGTTTTGAGTTGCTTGAAAAGTTGAGAAAGGACAGCAAT
TATCCGATTTTATTTTTAACAGCACGAGGGGAGGATGAAGACAAGTTTAAAGGATTTGGATTGGGAGCGGACGATTATAT
TGTAAAACCTTTTTTGCCAAAAGAACTTTTGTTTAGGATTACGGCAATTTTGCGACGGACTTACAAGGAAGAGAATTTTA
TTGTGAACTTAAATGGCTGTCAGATTGATTTTTCACGGGGAGAAATTGTAAAGGATGGGGAAAAAATTTCCTTAACTGCA
AAGGAATATGAACTATTAAAAACCTTATACAGAGATGCTGGACGAATTGTAACGATTGATTCGCTATGCGAAGCTATTTG
GGGCGAAAATGCTTATGTTTACTCAAATTCTTTGATGACACATATTAGACGGATTAGAGAAAAAATTGAGAAAGAGCCGT
CACATCCAGTTTCTCTCATAACAATGAAAGGATTAGGTTATAAATTAATCGTGGAGGGAAAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(11-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(153-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

51.111

96.154

0.491
  micA Streptococcus pneumoniae Cp1015

38.723

100

0.389
  vicR Streptococcus mutans UA159

39.301

97.863

0.385