Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   J5A73_RS08465 Genome accession   NZ_CP072377
Coordinates   1801581..1802285 (+) Length   234 a.a.
NCBI ID   WP_211614883.1    Uniprot ID   -
Organism   Leptotrichia sp. oral taxon 218 strain F0707     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1796581..1807285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5A73_RS08445 (J5A73_08445) - 1797603..1799306 (+) 1704 WP_211614874.1 AAA family ATPase -
  J5A73_RS08450 (J5A73_08450) - 1799483..1799980 (+) 498 WP_211614876.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  J5A73_RS08455 (J5A73_08455) - 1800068..1801006 (+) 939 WP_211614879.1 hypothetical protein -
  J5A73_RS08460 (J5A73_08460) - 1801051..1801389 (-) 339 WP_211614881.1 hypothetical protein -
  J5A73_RS08465 (J5A73_08465) scnR 1801581..1802285 (+) 705 WP_211614883.1 response regulator transcription factor Regulator
  J5A73_RS08470 (J5A73_08470) - 1802287..1803675 (+) 1389 WP_211614885.1 sensor histidine kinase KdpD -
  J5A73_RS08475 (J5A73_08475) - 1803763..1804419 (+) 657 WP_211614887.1 thiamine diphosphokinase -
  J5A73_RS08480 (J5A73_08480) - 1804439..1805677 (+) 1239 WP_211614890.1 RluA family pseudouridine synthase -
  J5A73_RS08485 (J5A73_08485) - 1805754..1807127 (+) 1374 WP_211614893.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26798.05 Da        Isoelectric Point: 5.5278

>NTDB_id=552209 J5A73_RS08465 WP_211614883.1 1801581..1802285(+) (scnR) [Leptotrichia sp. oral taxon 218 strain F0707]
MVEKYLRDKCILIVDDEQEILNMVVSILADGGYENTRTARNVKEALKCVEEKKPDFAILDVMLPDGNGFELLEKLRKDSD
YPILFLTARGEDEDKFKGFGLGADDYIVKPFLPKELLFRITAILRRTYKEENFIVNLNGCQIDFSRGEIVKDGGKFSLTA
KEYELLKTLYRNAGRIVTIDSLCEAIWGENAYVYSNSLMTHIRRIREKIEKEPSHPVSLITMKGLGYKLIVEGK

Nucleotide


Download         Length: 705 bp        

>NTDB_id=552209 J5A73_RS08465 WP_211614883.1 1801581..1802285(+) (scnR) [Leptotrichia sp. oral taxon 218 strain F0707]
ATGGTTGAAAAATATTTGAGAGATAAATGTATTTTAATTGTGGATGATGAGCAGGAAATTTTGAATATGGTTGTGTCGAT
TTTGGCAGATGGAGGTTATGAAAATACAAGGACTGCTAGAAATGTGAAAGAGGCTTTAAAATGTGTTGAAGAAAAGAAAC
CTGATTTTGCGATATTGGATGTGATGCTTCCAGATGGGAATGGTTTTGAGTTGCTTGAAAAGTTGAGAAAGGATAGTGAT
TATCCAATTTTATTTTTAACAGCACGAGGGGAGGATGAGGATAAATTTAAAGGATTTGGATTGGGAGCGGACGATTATAT
TGTAAAACCTTTTTTGCCAAAAGAACTTTTGTTTAGGATTACGGCAATTTTGCGACGGACTTACAAGGAAGAGAATTTTA
TTGTGAACTTGAATGGCTGTCAGATTGATTTTTCACGAGGAGAAATTGTAAAAGATGGGGGAAAATTTTCCTTAACTGCA
AAGGAATACGAACTACTAAAAACCTTATATAGAAATGCTGGACGAATTGTAACGATTGATTCGCTCTGTGAAGCTATTTG
GGGAGAAAATGCTTATGTTTACTCAAATTCTTTGATGACTCATATTAGACGGATTAGAGAAAAAATTGAGAAAGAGCCGT
CACATCCAGTTTCTCTTATAACAATGAAAGGATTAGGTTATAAATTAATCGTGGAGGGAAAATAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-229)

Response regulator receiver domain (Response_reg)

(11-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

51.556

96.154

0.496
  vicR Streptococcus mutans UA159

39.738

97.863

0.389
  micA Streptococcus pneumoniae Cp1015

38.627

99.573

0.385