Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   J4854_RS07680 Genome accession   NZ_CP072329
Coordinates   1531832..1532836 (-) Length   334 a.a.
NCBI ID   WP_200772618.1    Uniprot ID   -
Organism   Streptococcus lactarius strain CCUG 66490     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1526832..1537836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4854_RS07660 (J4854_07660) thrS 1526947..1528890 (-) 1944 WP_200772621.1 threonine--tRNA ligase -
  J4854_RS07665 (J4854_07665) - 1528959..1529104 (-) 146 Protein_1473 AAA family ATPase -
  J4854_RS07670 (J4854_07670) - 1529217..1530539 (-) 1323 WP_200772620.1 glycosyltransferase family 4 protein -
  J4854_RS07675 (J4854_07675) - 1530541..1531539 (-) 999 WP_200772619.1 glycosyltransferase family 4 protein -
  J4854_RS07680 (J4854_07680) ccpA 1531832..1532836 (-) 1005 WP_200772618.1 catabolite control protein A Regulator
  J4854_RS07685 (J4854_07685) - 1532997..1534079 (+) 1083 WP_200772617.1 M24 family metallopeptidase -
  J4854_RS07690 (J4854_07690) - 1534231..1534989 (+) 759 WP_200772616.1 amino acid ABC transporter ATP-binding protein -
  J4854_RS07695 (J4854_07695) - 1535001..1535795 (+) 795 WP_200772615.1 transporter substrate-binding domain-containing protein -
  J4854_RS07700 (J4854_07700) - 1535811..1536485 (+) 675 WP_187540417.1 amino acid ABC transporter permease -
  J4854_RS07705 (J4854_07705) - 1536497..1537156 (+) 660 WP_200772614.1 amino acid ABC transporter permease -
  J4854_RS07710 (J4854_07710) - 1537330..1537779 (-) 450 WP_187540413.1 Rrf2 family transcriptional regulator -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 37123.23 Da        Isoelectric Point: 6.7735

>NTDB_id=552060 J4854_RS07680 WP_200772618.1 1531832..1532836(-) (ccpA) [Streptococcus lactarius strain CCUG 66490]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIERLDYRPNAVARGLASKKTTTVGVVIPNITNSYFS
TLAKGIDDIAEMYKYNIVLANSDEDDDKEVSVVNNLFSKQVDGIVFMGYHLTEKIRSEFSRSRTPVVLAGTVDMEHQLPS
VNIDYKQATIDAVTQLAKHNKKIAFVSGPLVDDINGKIRLSGYKEALKAKKLSYSEGLVFESKYRYEEGYHLAERVIASK
ATAAFVTGDELAAGLLNGLSDQGVKVPEDFEIITSDDTQVTRYTRPNLSTIGQPLYDLGAISMRMLTKIMHKEELEEREV
VLSHDITKRGTTKK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=552060 J4854_RS07680 WP_200772618.1 1531832..1532836(-) (ccpA) [Streptococcus lactarius strain CCUG 66490]
ATGAATACAGACGATACAGTAACGATTTATGATGTCGCCCGTGAGGCAGGGGTTTCAATGGCAACCGTTAGCCGGGTTGT
GAATGGAAATAAAAACGTAAAAGAAAATACACGTAAAAAAGTTTTAGAAGTGATTGAACGCTTGGATTACCGTCCAAATG
CAGTTGCTCGTGGACTGGCTAGTAAGAAGACAACGACAGTTGGAGTTGTGATTCCAAATATCACCAACAGCTATTTCTCT
ACACTTGCAAAAGGAATTGACGACATAGCGGAAATGTACAAGTACAACATCGTCCTTGCAAATAGCGATGAAGACGATGA
CAAGGAAGTTTCGGTTGTTAATAACCTCTTTTCCAAACAAGTGGATGGGATTGTTTTCATGGGCTATCATTTGACTGAAA
AGATTCGTTCTGAATTTTCACGCTCTCGTACGCCAGTTGTGCTTGCTGGAACAGTGGATATGGAGCACCAATTGCCAAGT
GTCAATATTGATTACAAGCAAGCGACAATTGATGCTGTGACGCAACTTGCAAAGCACAACAAGAAAATTGCCTTTGTAAG
TGGTCCATTGGTAGATGATATCAATGGTAAGATCCGTTTATCAGGTTATAAAGAAGCTCTAAAAGCTAAAAAATTGAGCT
ATAGCGAAGGTCTGGTATTTGAATCCAAATACCGCTATGAGGAAGGCTACCATTTGGCAGAACGTGTCATTGCTTCAAAA
GCAACTGCTGCTTTTGTGACGGGAGATGAGTTGGCAGCTGGACTTTTGAATGGCTTGTCTGATCAAGGTGTCAAGGTGCC
TGAAGACTTTGAAATTATCACGAGTGATGATACACAAGTAACGCGTTACACTCGTCCAAATCTATCCACAATTGGCCAAC
CACTCTATGACCTTGGAGCCATTAGTATGCGGATGTTGACCAAGATTATGCACAAAGAAGAGTTGGAAGAACGTGAAGTA
GTATTGTCACATGATATTACGAAACGTGGAACTACGAAAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

91.018

100

0.91

  ccpA Streptococcus pneumoniae D39

84.431

100

0.844

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

57.402

99.102

0.569