Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   J4854_RS07640 Genome accession   NZ_CP072329
Coordinates   1522315..1523124 (-) Length   269 a.a.
NCBI ID   WP_200772624.1    Uniprot ID   A0A9X0WMR2
Organism   Streptococcus lactarius strain CCUG 66490     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1517315..1528124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4854_RS07615 (J4854_07615) rnc 1518588..1519289 (-) 702 WP_200772628.1 ribonuclease III -
  J4854_RS07620 (J4854_07620) - 1519390..1519776 (-) 387 WP_200772627.1 YbaN family protein -
  J4854_RS07625 (J4854_07625) - 1519853..1520392 (-) 540 WP_200772626.1 DUF3592 domain-containing protein -
  J4854_RS07630 (J4854_07630) - 1520393..1521442 (-) 1050 WP_234700091.1 hypothetical protein -
  J4854_RS07635 (J4854_07635) - 1521646..1522173 (-) 528 WP_200772625.1 hypothetical protein -
  J4854_RS07640 (J4854_07640) vicX 1522315..1523124 (-) 810 WP_200772624.1 MBL fold metallo-hydrolase Regulator
  J4854_RS07645 (J4854_07645) micB 1523132..1524487 (-) 1356 WP_187540437.1 cell wall metabolism sensor histidine kinase VicK Regulator
  J4854_RS07650 (J4854_07650) micA 1524480..1525181 (-) 702 WP_200772623.1 response regulator YycF Regulator
  J4854_RS07655 (J4854_07655) - 1525686..1526735 (+) 1050 WP_200772622.1 DUF389 domain-containing protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29733.75 Da        Isoelectric Point: 6.2817

>NTDB_id=552057 J4854_RS07640 WP_200772624.1 1522315..1523124(-) (vicX) [Streptococcus lactarius strain CCUG 66490]
MTEKGFKYSILASGSSGNSFYLETPKKKLLIDAGLSGKKITGLLAEIDRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEATWKAMEGTKYLGKVDDAQKHIFEMGKTKTFGDIDIESFGVSHDATAPQFYRLMKDGKSFVLLTDTGYVSDRLAG
IVADADGYLIESNHDVEILRAGSYAWRLKQRILSDLGHLSNEDGADAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMEN
QLARADLAVGHDFEVLDTSPDTATPLTKI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=552057 J4854_RS07640 WP_200772624.1 1522315..1523124(-) (vicX) [Streptococcus lactarius strain CCUG 66490]
ATGACAGAAAAGGGATTTAAGTATAGTATTTTAGCATCTGGTTCCAGTGGAAATTCTTTTTATCTGGAGACACCAAAGAA
AAAACTGCTCATTGATGCAGGCTTATCTGGAAAAAAGATTACGGGACTATTGGCTGAAATTGATCGCAAACCAGAAGACT
TAGATGCCATTTTGATTACGCACGAACACTCAGACCATATCCATGGTGTGGGTGTTTTAGCGCGGAAGTATGGAATGGAT
CTCTATGCTAATGAAGCTACTTGGAAGGCCATGGAAGGAACCAAGTATCTCGGCAAGGTCGATGATGCTCAAAAGCATAT
CTTTGAGATGGGCAAAACTAAGACTTTCGGAGATATTGATATCGAGAGTTTTGGGGTCAGTCACGATGCTACAGCCCCTC
AATTTTATCGCTTGATGAAGGATGGGAAGAGCTTTGTCTTGCTGACGGATACGGGCTATGTGAGTGATCGCTTAGCTGGA
ATCGTCGCGGATGCAGATGGCTATTTGATTGAGTCCAACCATGATGTGGAAATTCTTCGAGCAGGTTCCTATGCTTGGCG
CTTGAAGCAACGGATTTTATCTGATCTGGGTCACCTTTCAAATGAAGATGGGGCAGATGCCATGATCCGTACCTTAGGAA
ATCGTACCAAAAAGATTTATCTGGGGCATTTGTCAAAAGAGAACAATATCAAAGAATTGGCCCATATGACCATGGAGAAC
CAACTGGCTCGGGCAGATCTAGCAGTCGGTCATGATTTTGAAGTGCTGGATACCTCGCCAGACACTGCAACTCCATTGAC
GAAGATATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

78.067

100

0.781