Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   J4854_RS06815 Genome accession   NZ_CP072329
Coordinates   1343271..1345256 (-) Length   661 a.a.
NCBI ID   WP_200773426.1    Uniprot ID   A0A9X1BDE8
Organism   Streptococcus lactarius strain CCUG 66490     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1338271..1350256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4854_RS06795 (J4854_06795) - 1338734..1338925 (-) 192 Protein_1298 argininosuccinate lyase -
  J4854_RS06800 (J4854_06800) - 1339102..1340304 (-) 1203 WP_338058532.1 IS110 family transposase -
  J4854_RS06805 (J4854_06805) argH 1340547..1341743 (-) 1197 Protein_1300 argininosuccinate lyase -
  J4854_RS06810 (J4854_06810) - 1341756..1342955 (-) 1200 WP_200773427.1 argininosuccinate synthase -
  J4854_RS06815 (J4854_06815) amiA 1343271..1345256 (-) 1986 WP_200773426.1 peptide ABC transporter substrate-binding protein Regulator
  J4854_RS06820 (J4854_06820) - 1345679..1346716 (-) 1038 WP_200773425.1 M42 family metallopeptidase -
  J4854_RS06825 (J4854_06825) - 1346803..1347180 (-) 378 WP_200773424.1 hypothetical protein -
  J4854_RS06830 (J4854_06830) - 1347193..1349172 (-) 1980 WP_234700143.1 EndoU domain-containing protein -
  J4854_RS06835 (J4854_06835) - 1349169..1349522 (-) 354 WP_200773423.1 DUF3958 family protein -
  J4854_RS06840 (J4854_06840) - 1349525..1349872 (-) 348 WP_200773422.1 TIGR04197 family type VII secretion effector -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 73529.15 Da        Isoelectric Point: 5.4181

>NTDB_id=552055 J4854_RS06815 WP_200773426.1 1343271..1345256(-) (amiA) [Streptococcus lactarius strain CCUG 66490]
MKKRNVIALAGVALLSAGILAACSGGSKSSSSSNGQKFSYVYETEPENLNYLTSSKAATHDITGNLIDGLFENDKYGNLI
PSLAKDWTVSQDGLTYTYKLRDDAKWYDSEGEEYADVTAKDFVTGIKYAADNKSEMLYIIQDSIKGLNDYVSGKNKDFSA
VGVKAVDDHTLQITLNQPESFWNSKLTLGITFPVNEKFVKSKGDKFAQASDTSSLLYNGPYILKSFTSKSSIEMTKNQNY
WDKDKVYISDVKLEFYDGQDQSKLAKSFADNGLSLAKLFPTGSGYSEQAKEFKDEITYTPQDAASYVIGTNIDRQSYKHT
AKKTDEEKQSTKKALLNKDFRQAISFAFNREAYAAQLNGKDGASKIIRNLYIPPTFVQADGKTFGEMVKTQLDTYGDEWK
STKLDDGQNGLFDAKKAKEEFAKAKTALEAEGVKFPIHIDMPVDQTTPSRVQRVQSFKQSVEEALGKENVVIDIQMLSKE
DLQNATLFAPNAAGEDWDLSDNVGWSPDYQDPSTYMDILKASSGENTKTFLGFDPSENNEAAKKVGLYDFEKMIKDAGAE
TQDVNKRYEKYAAAQAWLTDSALVMPTSSSTGRPFLTRIEPFSAPFAWTGGKGKDHVIYKGMKLQDKAVTTADYNKALEK
WQKEQAESNKKAQEDLKKHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=552055 J4854_RS06815 WP_200773426.1 1343271..1345256(-) (amiA) [Streptococcus lactarius strain CCUG 66490]
ATGAAAAAAAGAAATGTCATTGCACTTGCGGGAGTTGCTCTCCTTTCAGCAGGGATCCTAGCAGCTTGTTCTGGTGGTTC
GAAATCATCTAGCTCAAGCAACGGTCAAAAATTCTCATATGTCTATGAGACGGAGCCTGAAAACTTGAACTACTTGACTT
CAAGTAAAGCAGCAACCCATGATATCACAGGAAACTTGATTGATGGTTTGTTTGAAAATGACAAATATGGTAACTTGATT
CCATCTCTTGCAAAAGACTGGACAGTTTCCCAAGATGGTTTGACTTATACTTATAAACTTCGTGATGATGCTAAATGGTA
TGATTCAGAAGGCGAAGAGTATGCGGATGTCACCGCTAAAGATTTCGTCACAGGGATCAAATATGCAGCTGATAATAAAT
CAGAAATGCTCTACATCATCCAAGATTCTATCAAAGGCTTGAATGACTACGTCAGTGGTAAAAATAAAGATTTCTCAGCT
GTAGGAGTAAAAGCAGTTGATGATCATACCCTTCAAATCACTTTGAACCAACCAGAATCATTCTGGAACTCTAAATTGAC
ACTTGGGATCACTTTCCCTGTCAATGAAAAATTCGTAAAATCAAAAGGAGATAAATTCGCCCAAGCAAGTGATACTAGCT
CCCTTCTTTACAATGGTCCTTACATCTTGAAGAGCTTTACTTCAAAATCTTCGATCGAAATGACCAAAAACCAAAACTAC
TGGGACAAAGACAAAGTTTATATCTCAGATGTCAAATTGGAGTTCTACGATGGACAAGATCAAAGTAAATTGGCCAAATC
ATTTGCGGACAATGGTCTTAGCTTAGCAAAACTCTTCCCAACTGGATCTGGTTATTCAGAGCAAGCCAAGGAATTCAAGG
ATGAAATTACCTATACTCCTCAAGATGCCGCTTCTTATGTCATTGGTACCAACATCGATCGTCAATCTTACAAACACACT
GCTAAGAAGACCGATGAGGAAAAACAATCTACGAAGAAAGCTCTCTTAAACAAGGACTTCCGTCAAGCGATCAGCTTTGC
CTTCAATCGTGAAGCGTATGCTGCTCAATTGAACGGAAAAGACGGAGCAAGCAAGATCATCCGTAACCTCTACATTCCAC
CAACATTTGTCCAAGCTGATGGAAAGACCTTTGGTGAAATGGTGAAAACACAATTGGATACCTACGGAGATGAGTGGAAA
TCTACTAAACTAGATGATGGTCAAAACGGTCTCTTCGATGCGAAGAAAGCAAAGGAAGAGTTTGCAAAAGCGAAAACTGC
TTTGGAAGCAGAAGGTGTGAAATTCCCAATTCACATCGATATGCCTGTAGACCAAACCACTCCATCAAGAGTTCAACGGG
TGCAATCTTTCAAACAATCAGTTGAAGAAGCGCTTGGTAAAGAAAATGTCGTCATCGATATCCAAATGCTTTCCAAAGAA
GACCTTCAAAATGCGACCCTCTTTGCGCCGAATGCGGCTGGCGAAGACTGGGATCTTTCTGATAATGTTGGATGGAGCCC
TGACTACCAAGACCCATCAACTTACATGGATATCTTGAAAGCTTCATCTGGTGAAAATACTAAGACTTTCCTTGGATTTG
ACCCAAGTGAAAACAATGAAGCAGCTAAAAAAGTTGGTCTGTACGACTTTGAAAAGATGATCAAAGATGCTGGTGCAGAA
ACACAAGACGTTAACAAACGCTATGAAAAATATGCGGCTGCGCAAGCTTGGTTGACTGATAGCGCCCTTGTTATGCCAAC
TTCTTCATCAACTGGACGTCCATTCTTGACACGTATTGAACCATTCTCAGCTCCATTTGCATGGACTGGTGGAAAAGGAA
AAGACCACGTTATCTACAAAGGAATGAAACTCCAAGACAAAGCTGTGACAACTGCTGACTACAACAAAGCCCTTGAAAAA
TGGCAAAAAGAACAAGCAGAGTCAAATAAAAAAGCACAAGAAGATCTTAAGAAACACGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.949

100

0.57
  amiA3 Streptococcus thermophilus LMD-9

56.798

100

0.569
  amiA3 Streptococcus thermophilus LMG 18311

56.042

100

0.561