Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   LUA14_RS14885 Genome accession   NZ_CP089530
Coordinates   2954426..2956198 (-) Length   590 a.a.
NCBI ID   WP_160242188.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LS1-002-014s     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2949426..2961198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA14_RS14865 (LUA14_14865) sdhA 2949638..2951398 (-) 1761 WP_003152573.1 succinate dehydrogenase flavoprotein subunit -
  LUA14_RS14870 (LUA14_14870) sdhC 2951432..2952040 (-) 609 WP_003152571.1 succinate dehydrogenase cytochrome B558 -
  LUA14_RS14875 (LUA14_14875) - 2952337..2952783 (+) 447 WP_007612940.1 YslB family protein -
  LUA14_RS14880 (LUA14_14880) - 2952830..2954059 (-) 1230 WP_025285071.1 aspartate kinase -
  LUA14_RS14885 (LUA14_14885) uvrC 2954426..2956198 (-) 1773 WP_160242188.1 excinuclease ABC subunit UvrC Machinery gene
  LUA14_RS14890 (LUA14_14890) trxA 2956341..2956655 (-) 315 WP_003152560.1 thioredoxin -
  LUA14_RS14895 (LUA14_14895) - 2956808..2958298 (-) 1491 WP_167340809.1 alpha-N-arabinofuranosidase -
  LUA14_RS14900 (LUA14_14900) - 2958512..2959489 (-) 978 WP_015240331.1 electron transfer flavoprotein subunit alpha/FixB family protein -
  LUA14_RS14905 (LUA14_14905) - 2959521..2960294 (-) 774 WP_007408121.1 electron transfer flavoprotein subunit beta/FixA family protein -
  LUA14_RS14910 (LUA14_14910) - 2960308..2961087 (-) 780 WP_015240332.1 enoyl-CoA hydratase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68386.31 Da        Isoelectric Point: 9.6173

>NTDB_id=551902 LUA14_RS14885 WP_160242188.1 2954426..2956198(-) (uvrC) [Bacillus amyloliquefaciens strain LS1-002-014s]
MNKQLKEKLALLPDQPGCYLMKDRQKTVIYVGKAKVLKNRVRSYFTGSHDAKTQRLVTEIEDFEYIVTSSNLEALILEMN
LIKKYDPKYNVMLKDDKTYPFIKITHERHPRLIVTRNVKKDKGRYFGPYPNVQAARETKKLLDRLYPLRKCSKLPDRVCL
YYHLGQCLAPCVKDISEETNREIVEDITRFLKGGHNEIKKELEAKMAEAAEKLEFERAKEFRDQLAHIESTMEKQKMTMN
DLLDRDVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEADEEFLTFIGQFYSKNNHFLPKEILVPDSVDRDMITEL
LETAVHQPKKGPKKELLLLAHKNAKIALREKFSLIERDEERSIGAAERLGEALNIYTPHRIEAFDNSNIQGTNPVSAMIV
FIDGKPNKKEYRKYKIKTVTGPDDYGSMREVVRRRYTRVLRENLPLPDLIIIDGGKGQINAARDVLENELSLDVPVAGLA
KDDKHRTSNLLIGDPLEPVFLERNSQEFYLLQRIQDEVHRFAISFHRQIRGKSVFQSVLDDIPGIGEKRKKMLLKHFGSV
KKMKEASLDDIKKAGVPAAAAQLLFEKLKK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=551902 LUA14_RS14885 WP_160242188.1 2954426..2956198(-) (uvrC) [Bacillus amyloliquefaciens strain LS1-002-014s]
ATGAATAAACAACTGAAAGAAAAACTGGCCCTCCTTCCCGATCAGCCGGGCTGTTATTTAATGAAAGACCGCCAAAAAAC
AGTCATCTACGTGGGGAAAGCGAAAGTCTTGAAAAACAGGGTGCGGTCTTATTTCACCGGTTCTCACGACGCAAAAACCC
AACGGCTTGTGACGGAGATTGAGGACTTTGAATATATCGTGACTTCCTCCAATCTTGAAGCGCTTATTTTGGAAATGAAT
CTGATTAAAAAATACGATCCGAAATACAATGTCATGCTGAAAGATGATAAAACCTATCCCTTTATTAAAATCACCCATGA
ACGCCATCCGCGGCTGATTGTCACCCGGAATGTCAAAAAAGACAAAGGACGCTATTTCGGCCCGTATCCGAATGTGCAGG
CGGCGCGGGAAACGAAAAAACTGCTGGACCGCCTTTACCCGCTCAGGAAATGCTCAAAGCTTCCGGACCGCGTCTGTCTC
TATTATCATCTCGGACAATGCCTCGCCCCATGTGTAAAGGATATATCTGAGGAGACAAACCGCGAGATTGTTGAAGACAT
TACCCGTTTTTTAAAGGGAGGGCATAACGAAATCAAAAAAGAGCTCGAAGCGAAAATGGCAGAAGCGGCGGAAAAGCTTG
AATTTGAACGGGCTAAAGAATTCCGCGACCAGCTTGCTCACATCGAATCGACGATGGAGAAGCAAAAAATGACCATGAAT
GACCTTCTGGACCGCGATGTGTTTGCATATGCCTATGATAAAGGCTGGATGTGCGTCCAAGTCTTTTTTATACGCCAAGG
AAAACTGATCGAACGCGATGTCAGCATGTTTCCGATGTATCAGGAAGCGGATGAAGAATTTCTGACCTTCATCGGCCAGT
TCTACTCTAAAAACAATCACTTTCTGCCTAAGGAAATTCTGGTGCCTGACAGCGTTGACAGGGACATGATCACCGAGCTG
TTGGAAACCGCCGTGCATCAGCCGAAAAAAGGCCCGAAAAAAGAGCTGCTTTTGCTTGCGCACAAAAATGCGAAAATCGC
TCTGCGGGAAAAATTCTCGTTAATCGAGCGGGATGAGGAACGGTCAATCGGTGCAGCCGAACGGCTCGGCGAAGCGCTGA
ATATTTATACGCCGCATCGGATTGAAGCGTTTGACAACTCCAATATTCAAGGCACAAACCCCGTATCGGCCATGATTGTC
TTTATTGACGGAAAACCGAATAAAAAGGAATACCGCAAATATAAAATTAAAACCGTAACAGGGCCGGATGATTACGGCTC
AATGAGGGAAGTCGTCAGAAGAAGATACACGAGGGTGCTTCGCGAAAATCTTCCGCTGCCGGATTTAATCATCATTGACG
GCGGAAAAGGGCAGATTAACGCGGCGCGCGACGTGCTCGAGAATGAGCTCAGCCTTGATGTCCCGGTAGCGGGATTGGCG
AAAGATGATAAACACCGAACATCCAACCTTTTGATCGGCGACCCGCTTGAACCGGTGTTTCTGGAGCGGAACAGCCAAGA
GTTTTACCTGCTTCAGCGCATTCAGGACGAAGTTCACCGTTTTGCGATCAGCTTTCACAGACAGATCCGGGGAAAAAGCG
TCTTTCAATCCGTTCTGGATGATATCCCCGGAATCGGCGAAAAACGCAAAAAAATGCTCTTAAAACATTTCGGATCTGTC
AAAAAGATGAAGGAAGCAAGCCTTGACGATATCAAAAAAGCGGGTGTGCCGGCCGCGGCGGCCCAGCTGCTGTTTGAAAA
ATTAAAAAAATAG

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(16-90)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-523)

UvrB/uvrC motif (UVR)

(198-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

59.524

99.661

0.593
  uvrC Streptococcus pneumoniae R6

59.184

99.661

0.59
  uvrC Streptococcus pneumoniae D39

59.184

99.661

0.59