Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   LUY96_RS04775 Genome accession   NZ_CP089502
Coordinates   945190..945792 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain 3488_VV_ ST8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 940190..950792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY96_RS04755 yajC 941686..941946 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  LUY96_RS04760 tgt 941965..943104 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  LUY96_RS04765 queA 943127..944152 (-) 1026 WP_061642009.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  LUY96_RS04770 ruvB 944154..945158 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LUY96_RS04775 ruvA 945190..945792 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  LUY96_RS04780 - 945806..946261 (-) 456 WP_000368902.1 ACT domain-containing protein -
  LUY96_RS04785 obgE 946274..947566 (-) 1293 WP_000496100.1 GTPase ObgE -
  LUY96_RS04790 rpmA 947921..948205 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  LUY96_RS04795 - 948217..948537 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  LUY96_RS04800 rplU 948543..948851 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  LUY96_RS04805 mreD 949018..949548 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  LUY96_RS04810 mreC 949548..950390 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  LUY96_RS04815 - 950590..950709 (-) 120 WP_000840602.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=551573 LUY96_RS04775 WP_000271547.1 945190..945792(-) (ruvA) [Staphylococcus aureus strain 3488_VV_ ST8]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=551573 LUY96_RS04775 WP_000271547.1 945190..945792(-) (ruvA) [Staphylococcus aureus strain 3488_VV_ ST8]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425