Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   LUY93_RS07355 Genome accession   NZ_CP089500
Coordinates   1471411..1472013 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain 3144_IIV_ST8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1466411..1477013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY93_RS07335 yajC 1467907..1468167 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  LUY93_RS07340 tgt 1468186..1469325 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  LUY93_RS07345 queA 1469348..1470373 (-) 1026 WP_001019172.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  LUY93_RS07350 ruvB 1470375..1471379 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LUY93_RS07355 ruvA 1471411..1472013 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  LUY93_RS07360 - 1472027..1472482 (-) 456 WP_000368902.1 ACT domain-containing protein -
  LUY93_RS07365 obgE 1472495..1473787 (-) 1293 WP_000496100.1 GTPase ObgE -
  LUY93_RS07370 rpmA 1474142..1474426 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  LUY93_RS07375 - 1474438..1474758 (-) 321 WP_016187883.1 ribosomal-processing cysteine protease Prp -
  LUY93_RS07380 rplU 1474764..1475072 (-) 309 WP_000457385.1 50S ribosomal protein L21 -
  LUY93_RS07385 mreD 1475239..1475769 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  LUY93_RS07390 mreC 1475769..1476611 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  LUY93_RS07395 - 1476811..1476930 (-) 120 WP_000840602.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=551499 LUY93_RS07355 WP_000271547.1 1471411..1472013(-) (ruvA) [Staphylococcus aureus strain 3144_IIV_ST8]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=551499 LUY93_RS07355 WP_000271547.1 1471411..1472013(-) (ruvA) [Staphylococcus aureus strain 3144_IIV_ST8]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425