NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	J5P21_RS21180	Genome accession	NZ_CP072122
Coordinates	107958..108818 (-)	Length	286 a.a.
NCBI ID	WP_045544616.1	Uniprot ID	A0A1S2G4K1
Organism	Acinetobacter baumannii strain KSK1
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 102958..113818

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5P21_RS00515 (J5P21_00515)	-	103849..105159 (+)	1311	WP_049590048.1	tetratricopeptide repeat protein	-
J5P21_RS00520 (J5P21_00520)	-	105236..105562 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
J5P21_RS00525 (J5P21_00525)	rlmB	105664..106413 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
J5P21_RS00530 (J5P21_00530)	-	106449..107363 (+)	915	WP_000075014.1	DMT family transporter	-
J5P21_RS00535 (J5P21_00535)	coaE	107360..107956 (-)	597	WP_000874127.1	dephospho-CoA kinase	-
J5P21_RS21180 (J5P21_00540)	pilD	107958..108818 (-)	861	WP_045544616.1	prepilin peptidase	Machinery gene
J5P21_RS00545 (J5P21_00545)	pilC	108818..110044 (-)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
J5P21_RS00550 (J5P21_00550)	pilB	110074..111786 (-)	1713	WP_045544615.1	type IV-A pilus assembly ATPase PilB	Machinery gene
J5P21_RS00555 (J5P21_00555)	tpiA	112077..112871 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
J5P21_RS00560 (J5P21_00560)	secG	112884..113213 (+)	330	WP_045544614.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32102.55 Da Isoelectric Point: 7.1041

                                >NTDB_id=550796 J5P21_RS21180 WP_045544616.1 107958..108818(-) (pilD) [Acinetobacter baumannii strain KSK1]

MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP

IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIIYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=550796 J5P21_RS21180 WP_045544616.1 107958..108818(-) (pilD) [Acinetobacter baumannii strain KSK1]

ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG

TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA

ATCCCGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG

ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG

TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTATTTGGCCCAACCATACAAA

TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC

TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG

TTATCTCATTGGTTTCCTATGTCTTTGGATTATCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG

GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA

CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT

TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A1S2G4K1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	98.601	100	0.986
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	54.412	95.105	0.517
pilD	Vibrio campbellii strain DS40M4	52.555	95.804	0.503
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441

Detailed information NTG0550796