Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   J5P21_RS16645 Genome accession   NZ_CP072122
Coordinates   3478829..3479302 (-) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain KSK1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3473829..3484302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5P21_RS16630 (J5P21_16630) pilX 3476458..3477276 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  J5P21_RS16635 (J5P21_16635) pilW 3477273..3478274 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  J5P21_RS16640 (J5P21_16640) pilV 3478275..3478835 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  J5P21_RS16645 (J5P21_16645) fimU 3478829..3479302 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  J5P21_RS16650 (J5P21_16650) ispH 3479472..3480422 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  J5P21_RS16655 (J5P21_16655) gmk 3480545..3481174 (+) 630 WP_000015937.1 guanylate kinase -
  J5P21_RS16660 (J5P21_16660) rpoZ 3481247..3481525 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  J5P21_RS16665 (J5P21_16665) - 3481564..3481694 (+) 131 Protein_3274 hypothetical protein -
  J5P21_RS16670 (J5P21_16670) - 3481734..3483839 (+) 2106 WP_001117590.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=550784 J5P21_RS16645 WP_001214065.1 3478829..3479302(-) (fimU) [Acinetobacter baumannii strain KSK1]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=550784 J5P21_RS16645 WP_001214065.1 3478829..3479302(-) (fimU) [Acinetobacter baumannii strain KSK1]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1