Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   J5P21_RS16630 Genome accession   NZ_CP072122
Coordinates   3476458..3477276 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain KSK1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3471458..3482276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5P21_RS16615 (J5P21_16615) pilE 3471675..3472100 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  J5P21_RS16620 (J5P21_16620) pilY2 3472097..3472579 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  J5P21_RS16625 (J5P21_16625) pilY1 3472592..3476446 (-) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  J5P21_RS16630 (J5P21_16630) pilX 3476458..3477276 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  J5P21_RS16635 (J5P21_16635) pilW 3477273..3478274 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  J5P21_RS16640 (J5P21_16640) pilV 3478275..3478835 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  J5P21_RS16645 (J5P21_16645) fimU 3478829..3479302 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  J5P21_RS16650 (J5P21_16650) ispH 3479472..3480422 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  J5P21_RS16655 (J5P21_16655) gmk 3480545..3481174 (+) 630 WP_000015937.1 guanylate kinase -
  J5P21_RS16660 (J5P21_16660) rpoZ 3481247..3481525 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  J5P21_RS16665 (J5P21_16665) - 3481564..3481694 (+) 131 Protein_3274 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=550781 J5P21_RS16630 WP_000149374.1 3476458..3477276(-) (pilX) [Acinetobacter baumannii strain KSK1]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=550781 J5P21_RS16630 WP_000149374.1 3476458..3477276(-) (pilX) [Acinetobacter baumannii strain KSK1]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCTATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993