Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   J5P21_RS16640 Genome accession   NZ_CP072122
Coordinates   3478275..3478835 (-) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain KSK1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3473275..3483835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5P21_RS16630 (J5P21_16630) pilX 3476458..3477276 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  J5P21_RS16635 (J5P21_16635) pilW 3477273..3478274 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  J5P21_RS16640 (J5P21_16640) pilV 3478275..3478835 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  J5P21_RS16645 (J5P21_16645) fimU 3478829..3479302 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  J5P21_RS16650 (J5P21_16650) ispH 3479472..3480422 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  J5P21_RS16655 (J5P21_16655) gmk 3480545..3481174 (+) 630 WP_000015937.1 guanylate kinase -
  J5P21_RS16660 (J5P21_16660) rpoZ 3481247..3481525 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  J5P21_RS16665 (J5P21_16665) - 3481564..3481694 (+) 131 Protein_3274 hypothetical protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=550783 J5P21_RS16640 WP_002194578.1 3478275..3478835(-) (pilV) [Acinetobacter baumannii strain KSK1]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=550783 J5P21_RS16640 WP_002194578.1 3478275..3478835(-) (pilV) [Acinetobacter baumannii strain KSK1]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414