Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   J5X95_RS07465 Genome accession   NZ_CP072120
Coordinates   1465653..1465772 (+) Length   39 a.a.
NCBI ID   WP_007407639.1    Uniprot ID   A3KLD5
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 1460653..1470772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS07445 (J5X95_07445) - 1461003..1461515 (+) 513 Protein_1467 bacteriocin biosynthesis protein AlbG -
  J5X95_RS07450 (J5X95_07450) - 1461522..1462898 (-) 1377 WP_094031367.1 YncE family protein -
  J5X95_RS07455 (J5X95_07455) - 1462938..1464293 (-) 1356 WP_015240776.1 YncE family protein -
  J5X95_RS07460 (J5X95_07460) rapF 1464524..1465669 (+) 1146 WP_007407638.1 tetratricopeptide repeat protein Regulator
  J5X95_RS07465 (J5X95_07465) phrF 1465653..1465772 (+) 120 WP_007407639.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  J5X95_RS07470 (J5X95_07470) - 1465970..1466173 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  J5X95_RS07475 (J5X95_07475) - 1466187..1466390 (+) 204 WP_007407641.1 hypothetical protein -
  J5X95_RS07480 (J5X95_07480) - 1466425..1466610 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  J5X95_RS07485 (J5X95_07485) - 1466796..1467077 (+) 282 WP_007407643.1 hypothetical protein -
  J5X95_RS07490 (J5X95_07490) - 1467121..1467633 (+) 513 WP_094031368.1 stage II sporulation protein M -
  J5X95_RS07495 (J5X95_07495) - 1468224..1468442 (-) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  J5X95_RS07500 (J5X95_07500) speB 1468610..1469482 (-) 873 WP_007614448.1 agmatinase -
  J5X95_RS07505 (J5X95_07505) speE 1469541..1470371 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4295.19 Da        Isoelectric Point: 10.0233

>NTDB_id=550710 J5X95_RS07465 WP_007407639.1 1465653..1465772(+) (phrF) [Bacillus amyloliquefaciens strain GKT04]
MKLKYKLALTCLAISTVFVSAEIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=550710 J5X95_RS07465 WP_007407639.1 1465653..1465772(+) (phrF) [Bacillus amyloliquefaciens strain GKT04]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGAAATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462