Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   J5X95_RS07460 Genome accession   NZ_CP072120
Coordinates   1464524..1465669 (+) Length   381 a.a.
NCBI ID   WP_007407638.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1459524..1470669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS07440 (J5X95_07440) - 1460421..1460849 (-) 429 WP_007407634.1 DUF1934 domain-containing protein -
  J5X95_RS07445 (J5X95_07445) - 1461003..1461515 (+) 513 Protein_1467 bacteriocin biosynthesis protein AlbG -
  J5X95_RS07450 (J5X95_07450) - 1461522..1462898 (-) 1377 WP_094031367.1 YncE family protein -
  J5X95_RS07455 (J5X95_07455) - 1462938..1464293 (-) 1356 WP_015240776.1 YncE family protein -
  J5X95_RS07460 (J5X95_07460) rapF 1464524..1465669 (+) 1146 WP_007407638.1 tetratricopeptide repeat protein Regulator
  J5X95_RS07465 (J5X95_07465) phrF 1465653..1465772 (+) 120 WP_007407639.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  J5X95_RS07470 (J5X95_07470) - 1465970..1466173 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  J5X95_RS07475 (J5X95_07475) - 1466187..1466390 (+) 204 WP_007407641.1 hypothetical protein -
  J5X95_RS07480 (J5X95_07480) - 1466425..1466610 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  J5X95_RS07485 (J5X95_07485) - 1466796..1467077 (+) 282 WP_007407643.1 hypothetical protein -
  J5X95_RS07490 (J5X95_07490) - 1467121..1467633 (+) 513 WP_094031368.1 stage II sporulation protein M -
  J5X95_RS07495 (J5X95_07495) - 1468224..1468442 (-) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  J5X95_RS07500 (J5X95_07500) speB 1468610..1469482 (-) 873 WP_007614448.1 agmatinase -
  J5X95_RS07505 (J5X95_07505) speE 1469541..1470371 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45543.57 Da        Isoelectric Point: 4.5769

>NTDB_id=550709 J5X95_RS07460 WP_007407638.1 1464524..1465669(+) (rapF) [Bacillus amyloliquefaciens strain GKT04]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=550709 J5X95_RS07460 WP_007407638.1 1464524..1465669(+) (rapF) [Bacillus amyloliquefaciens strain GKT04]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCACAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATCGCCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(189-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.478

100

0.785
  rapC Bacillus subtilis subsp. subtilis str. 168

56.579

99.738

0.564