Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   J5X95_RS06525 Genome accession   NZ_CP072120
Coordinates   1278878..1280041 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1273878..1285041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS06495 (J5X95_06495) - 1274142..1274561 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  J5X95_RS06500 (J5X95_06500) comFC 1274635..1275324 (-) 690 WP_197200179.1 phosphoribosyltransferase family protein Machinery gene
  J5X95_RS06505 (J5X95_06505) - 1275330..1275614 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  J5X95_RS06510 (J5X95_06510) comFA 1275672..1277057 (-) 1386 WP_099320008.1 DEAD/DEAH box helicase Machinery gene
  J5X95_RS06515 (J5X95_06515) - 1277166..1278014 (-) 849 WP_094031329.1 DegV family protein -
  J5X95_RS06520 (J5X95_06520) degU 1278112..1278801 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  J5X95_RS06525 (J5X95_06525) degS 1278878..1280041 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  J5X95_RS06530 (J5X95_06530) - 1280264..1280911 (+) 648 WP_007407485.1 YigZ family protein -
  J5X95_RS06535 (J5X95_06535) - 1280916..1282151 (+) 1236 WP_025285355.1 LCP family protein -
  J5X95_RS06540 (J5X95_06540) - 1282250..1283326 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  J5X95_RS06545 (J5X95_06545) tuaH 1283459..1284655 (-) 1197 WP_094031330.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=550705 J5X95_RS06525 WP_007407484.1 1278878..1280041(-) (degS) [Bacillus amyloliquefaciens strain GKT04]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=550705 J5X95_RS06525 WP_007407484.1 1278878..1280041(-) (degS) [Bacillus amyloliquefaciens strain GKT04]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTTAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951