Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   J5X95_RS06510 Genome accession   NZ_CP072120
Coordinates   1275672..1277057 (-) Length   461 a.a.
NCBI ID   WP_099320008.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1270672..1282057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS06475 (J5X95_06475) flgL 1270847..1271764 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  J5X95_RS06480 (J5X95_06480) flgK 1271776..1273293 (-) 1518 WP_025285351.1 flagellar hook-associated protein FlgK -
  J5X95_RS06485 (J5X95_06485) - 1273309..1273791 (-) 483 WP_003151394.1 flagellar protein FlgN -
  J5X95_RS06490 (J5X95_06490) flgM 1273806..1274072 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  J5X95_RS06495 (J5X95_06495) - 1274142..1274561 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  J5X95_RS06500 (J5X95_06500) comFC 1274635..1275324 (-) 690 WP_197200179.1 phosphoribosyltransferase family protein Machinery gene
  J5X95_RS06505 (J5X95_06505) - 1275330..1275614 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  J5X95_RS06510 (J5X95_06510) comFA 1275672..1277057 (-) 1386 WP_099320008.1 DEAD/DEAH box helicase Machinery gene
  J5X95_RS06515 (J5X95_06515) - 1277166..1278014 (-) 849 WP_094031329.1 DegV family protein -
  J5X95_RS06520 (J5X95_06520) degU 1278112..1278801 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  J5X95_RS06525 (J5X95_06525) degS 1278878..1280041 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  J5X95_RS06530 (J5X95_06530) - 1280264..1280911 (+) 648 WP_007407485.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52775.27 Da        Isoelectric Point: 10.1560

>NTDB_id=550703 J5X95_RS06510 WP_099320008.1 1275672..1277057(-) (comFA) [Bacillus amyloliquefaciens strain GKT04]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYYWNQAYENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVYAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=550703 J5X95_RS06510 WP_099320008.1 1275672..1277057(-) (comFA) [Bacillus amyloliquefaciens strain GKT04]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGACCAGCGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTATTGGAATCAGGCCTATGAAAACAG
CTGGGAACCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCTCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATGTAAGGGCAGAAGGCGTTTATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(329-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623
  comFA Latilactobacillus sakei subsp. sakei 23K

39.713

90.672

0.36