Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   J5X95_RS06520 Genome accession   NZ_CP072120
Coordinates   1278112..1278801 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1273112..1283801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS06485 (J5X95_06485) - 1273309..1273791 (-) 483 WP_003151394.1 flagellar protein FlgN -
  J5X95_RS06490 (J5X95_06490) flgM 1273806..1274072 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  J5X95_RS06495 (J5X95_06495) - 1274142..1274561 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  J5X95_RS06500 (J5X95_06500) comFC 1274635..1275324 (-) 690 WP_197200179.1 phosphoribosyltransferase family protein Machinery gene
  J5X95_RS06505 (J5X95_06505) - 1275330..1275614 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  J5X95_RS06510 (J5X95_06510) comFA 1275672..1277057 (-) 1386 WP_099320008.1 DEAD/DEAH box helicase Machinery gene
  J5X95_RS06515 (J5X95_06515) - 1277166..1278014 (-) 849 WP_094031329.1 DegV family protein -
  J5X95_RS06520 (J5X95_06520) degU 1278112..1278801 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  J5X95_RS06525 (J5X95_06525) degS 1278878..1280041 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  J5X95_RS06530 (J5X95_06530) - 1280264..1280911 (+) 648 WP_007407485.1 YigZ family protein -
  J5X95_RS06535 (J5X95_06535) - 1280916..1282151 (+) 1236 WP_025285355.1 LCP family protein -
  J5X95_RS06540 (J5X95_06540) - 1282250..1283326 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=550704 J5X95_RS06520 WP_003219701.1 1278112..1278801(-) (degU) [Bacillus amyloliquefaciens strain GKT04]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=550704 J5X95_RS06520 WP_003219701.1 1278112..1278801(-) (degU) [Bacillus amyloliquefaciens strain GKT04]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1