Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   J5X95_RS01580 Genome accession   NZ_CP072120
Coordinates   322744..323079 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 317744..328079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS01560 (J5X95_01560) gcvT 318350..319450 (-) 1101 WP_032866432.1 glycine cleavage system aminomethyltransferase GcvT -
  J5X95_RS01565 (J5X95_01565) - 319874..321544 (+) 1671 WP_124934996.1 DEAD/DEAH box helicase -
  J5X95_RS01570 (J5X95_01570) - 321566..322360 (+) 795 WP_076424968.1 YqhG family protein -
  J5X95_RS01575 (J5X95_01575) sinI 322537..322710 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  J5X95_RS01580 (J5X95_01580) sinR 322744..323079 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  J5X95_RS01585 (J5X95_01585) tasA 323127..323912 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  J5X95_RS01590 (J5X95_01590) sipW 323977..324561 (-) 585 WP_015240205.1 signal peptidase I SipW -
  J5X95_RS01595 (J5X95_01595) tapA 324533..325204 (-) 672 WP_124934997.1 amyloid fiber anchoring/assembly protein TapA -
  J5X95_RS01600 (J5X95_01600) - 325463..325792 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  J5X95_RS01605 (J5X95_01605) - 325832..326011 (-) 180 WP_003153093.1 YqzE family protein -
  J5X95_RS01610 (J5X95_01610) comGG 326068..326445 (-) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  J5X95_RS01615 (J5X95_01615) comGF 326446..326946 (-) 501 WP_257899725.1 competence type IV pilus minor pilin ComGF -
  J5X95_RS01620 (J5X95_01620) comGE 326855..327169 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  J5X95_RS01625 (J5X95_01625) comGD 327153..327590 (-) 438 WP_043020787.1 competence type IV pilus minor pilin ComGD Machinery gene
  J5X95_RS01630 (J5X95_01630) comGC 327580..327888 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=550679 J5X95_RS01580 WP_003153104.1 322744..323079(+) (sinR) [Bacillus amyloliquefaciens strain GKT04]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=550679 J5X95_RS01580 WP_003153104.1 322744..323079(+) (sinR) [Bacillus amyloliquefaciens strain GKT04]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991