Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   J5X95_RS00320 Genome accession   NZ_CP072120
Coordinates   41518..42126 (+) Length   202 a.a.
NCBI ID   WP_094031925.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 36518..47126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS00280 (J5X95_00280) - 37571..38077 (-) 507 WP_012117833.1 PTS sugar transporter subunit IIA -
  J5X95_RS00285 (J5X95_00285) - 38216..38629 (+) 414 WP_017418017.1 Hsp20/alpha crystallin family protein -
  J5X95_RS00290 (J5X95_00290) - 38659..39093 (-) 435 WP_007409493.1 YppG family protein -
  J5X95_RS00295 (J5X95_00295) - 39280..39462 (+) 183 WP_003153532.1 YppF family protein -
  J5X95_RS00300 (J5X95_00300) - 39501..39869 (-) 369 WP_007409492.1 YppE family protein -
  J5X95_RS00305 (J5X95_00305) - 39915..40160 (-) 246 WP_015240083.1 DUF5446 family protein -
  J5X95_RS00310 (J5X95_00310) sspM 40366..40470 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  J5X95_RS00315 (J5X95_00315) - 40514..41476 (-) 963 WP_094031795.1 DUF2515 domain-containing protein -
  J5X95_RS00320 (J5X95_00320) recU 41518..42126 (+) 609 WP_094031925.1 Holliday junction resolvase RecU Machinery gene
  J5X95_RS00325 (J5X95_00325) - 42165..44948 (+) 2784 WP_094031796.1 PBP1A family penicillin-binding protein -
  J5X95_RS00330 (J5X95_00330) - 45026..45517 (-) 492 WP_094031797.1 YpoC family protein -
  J5X95_RS00335 (J5X95_00335) nth 45514..46173 (-) 660 WP_076425357.1 endonuclease III -
  J5X95_RS00340 (J5X95_00340) dnaD 46192..46890 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23694.77 Da        Isoelectric Point: 9.5849

>NTDB_id=550675 J5X95_RS00320 WP_094031925.1 41518..42126(+) (recU) [Bacillus amyloliquefaciens strain GKT04]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRRDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=550675 J5X95_RS00320 WP_094031925.1 41518..42126(+) (recU) [Bacillus amyloliquefaciens strain GKT04]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAGAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

89.95

98.515

0.886