Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   LUY97_RS02085 Genome accession   NZ_CP089483
Coordinates   384589..385191 (+) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain 0104_III_ST239     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 379589..390191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY97_RS02045 - 379672..379791 (+) 120 WP_000840602.1 hypothetical protein -
  LUY97_RS02050 mreC 379991..380833 (+) 843 WP_000911041.1 rod shape-determining protein MreC -
  LUY97_RS02055 mreD 380833..381363 (+) 531 WP_001259925.1 rod shape-determining protein MreD -
  LUY97_RS02060 rplU 381530..381838 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  LUY97_RS02065 - 381844..382164 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  LUY97_RS02070 rpmA 382176..382460 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  LUY97_RS02075 obgE 382815..384107 (+) 1293 WP_000496100.1 GTPase ObgE -
  LUY97_RS02080 - 384120..384575 (+) 456 WP_000368902.1 ACT domain-containing protein -
  LUY97_RS02085 ruvA 384589..385191 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  LUY97_RS02090 ruvB 385223..386227 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LUY97_RS02095 queA 386229..387254 (+) 1026 WP_061642009.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  LUY97_RS02100 tgt 387277..388416 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  LUY97_RS02105 yajC 388435..388695 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=550667 LUY97_RS02085 WP_000271547.1 384589..385191(+) (ruvA) [Staphylococcus aureus strain 0104_III_ST239]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=550667 LUY97_RS02085 WP_000271547.1 384589..385191(+) (ruvA) [Staphylococcus aureus strain 0104_III_ST239]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425