Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   LUY99_RS02835 Genome accession   NZ_CP089479
Coordinates   596583..597185 (-) Length   200 a.a.
NCBI ID   WP_000271544.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 0073_III_ST239     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 591583..602185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY99_RS02815 yajC 593079..593339 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  LUY99_RS02820 tgt 593358..594497 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  LUY99_RS02825 queA 594520..595545 (-) 1026 WP_001019171.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  LUY99_RS02830 ruvB 595547..596551 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LUY99_RS02835 ruvA 596583..597185 (-) 603 WP_000271544.1 Holliday junction branch migration protein RuvA Machinery gene
  LUY99_RS02840 - 597199..597654 (-) 456 WP_000368902.1 ACT domain-containing protein -
  LUY99_RS02845 obgE 597667..598959 (-) 1293 WP_000496100.1 GTPase ObgE -
  LUY99_RS02850 rpmA 599314..599598 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  LUY99_RS02855 - 599610..599930 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  LUY99_RS02860 rplU 599936..600244 (-) 309 WP_000457385.1 50S ribosomal protein L21 -
  LUY99_RS02865 mreD 600411..600942 (-) 532 Protein_569 rod shape-determining protein MreD -
  LUY99_RS02870 mreC 600942..601784 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  LUY99_RS02875 - 601984..602103 (-) 120 WP_000840602.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22236.42 Da        Isoelectric Point: 6.2380

>NTDB_id=550511 LUY99_RS02835 WP_000271544.1 596583..597185(-) (ruvA) [Staphylococcus aureus strain 0073_III_ST239]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLHGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=550511 LUY99_RS02835 WP_000271544.1 596583..597185(-) (ruvA) [Staphylococcus aureus strain 0073_III_ST239]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGCATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae R6

45.226

99.5

0.45
  ruvA Streptococcus pneumoniae D39

45.226

99.5

0.45
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.211

99.5

0.42