Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PCC7418_RS01150 Genome accession   NC_019779
Coordinates   258427..258798 (+) Length   123 a.a.
NCBI ID   WP_015224341.1    Uniprot ID   -
Organism   Halothece sp. PCC 7418     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 253427..263798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCC7418_RS01135 (PCC7418_0223) tilS 253988..254974 (+) 987 WP_015224338.1 tRNA lysidine(34) synthetase TilS -
  PCC7418_RS01140 (PCC7418_0224) hmpF 255151..256860 (-) 1710 WP_015224339.1 pilus motility taxis protein HmpF -
  PCC7418_RS01145 (PCC7418_0225) - 257092..258303 (+) 1212 WP_015224340.1 response regulator -
  PCC7418_RS01150 (PCC7418_0226) pilH 258427..258798 (+) 372 WP_015224341.1 response regulator transcription factor Machinery gene
  PCC7418_RS01155 (PCC7418_0227) - 258811..259347 (+) 537 WP_015224342.1 chemotaxis protein CheW -
  PCC7418_RS01160 (PCC7418_0228) - 259477..262155 (+) 2679 WP_015224343.1 HAMP domain-containing methyl-accepting chemotaxis protein -
  PCC7418_RS01165 (PCC7418_0229) - 262161..262949 (+) 789 WP_015224344.1 MlaE family lipid ABC transporter permease subunit -
  PCC7418_RS01170 (PCC7418_0230) - 262989..263414 (+) 426 WP_015224345.1 DUF3119 family protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13588.63 Da        Isoelectric Point: 4.2296

>NTDB_id=55049 PCC7418_RS01150 WP_015224341.1 258427..258798(+) (pilH) [Halothece sp. PCC 7418]
MSTVLVVEDSVTQRQMISDLLKESGLNASVISVGDGVEALEQIQTQPPDIVVLDIVMPRMNGYEVCRQIKTDPNTENVPV
IMCSSKGEEFDKYWGMKQGADAYIAKPFEPTELIGTIKQLLRG

Nucleotide


Download         Length: 372 bp        

>NTDB_id=55049 PCC7418_RS01150 WP_015224341.1 258427..258798(+) (pilH) [Halothece sp. PCC 7418]
ATGAGTACGGTTTTAGTTGTTGAAGATAGCGTGACCCAGAGACAAATGATTTCCGATTTGCTCAAAGAGAGTGGGTTAAA
CGCATCAGTGATTAGTGTGGGTGATGGCGTGGAGGCTCTAGAGCAAATTCAAACGCAACCCCCCGATATCGTTGTTTTAG
ATATTGTGATGCCTCGCATGAATGGTTATGAAGTTTGCCGTCAAATTAAGACTGATCCCAACACCGAAAATGTCCCAGTA
ATCATGTGTTCTTCTAAAGGAGAAGAATTTGATAAATATTGGGGGATGAAACAAGGAGCAGATGCTTATATTGCTAAGCC
TTTTGAACCTACCGAACTCATTGGTACAATTAAGCAATTGCTGAGGGGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

71.311

99.187

0.707
  pilG Acinetobacter baumannii strain A118

44.828

94.309

0.423
  micA Streptococcus pneumoniae Cp1015

39.516

100

0.398

Multiple sequence alignment