Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   LUY90_RS02430 Genome accession   NZ_CP089477
Coordinates   426494..427096 (+) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain 0.1345_II_ST5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 421494..432096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY90_RS02390 - 421577..421696 (+) 120 WP_000840602.1 hypothetical protein -
  LUY90_RS02395 mreC 421896..422738 (+) 843 WP_000911041.1 rod shape-determining protein MreC -
  LUY90_RS02400 mreD 422738..423268 (+) 531 WP_001259925.1 rod shape-determining protein MreD -
  LUY90_RS02405 rplU 423435..423743 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  LUY90_RS02410 - 423749..424069 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  LUY90_RS02415 rpmA 424081..424365 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  LUY90_RS02420 obgE 424720..426012 (+) 1293 WP_000496100.1 GTPase ObgE -
  LUY90_RS02425 - 426025..426480 (+) 456 WP_000368902.1 ACT domain-containing protein -
  LUY90_RS02430 ruvA 426494..427096 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  LUY90_RS02435 ruvB 427128..428132 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LUY90_RS02440 queA 428134..429159 (+) 1026 WP_001019172.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  LUY90_RS02445 tgt 429182..430321 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  LUY90_RS02450 yajC 430340..430600 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=550403 LUY90_RS02430 WP_000271547.1 426494..427096(+) (ruvA) [Staphylococcus aureus strain 0.1345_II_ST5]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=550403 LUY90_RS02430 WP_000271547.1 426494..427096(+) (ruvA) [Staphylococcus aureus strain 0.1345_II_ST5]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425