Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   CYAN10605_RS04550 Genome accession   NC_019776
Coordinates   1107703..1109739 (-) Length   678 a.a.
NCBI ID   WP_015218770.1    Uniprot ID   K9Z1J7
Organism   Cyanobacterium aponinum PCC 10605     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1102703..1114739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYAN10605_RS04530 (Cyan10605_0905) - 1103787..1104563 (+) 777 WP_015218766.1 DUF1868 domain-containing protein -
  CYAN10605_RS04535 (Cyan10605_0906) - 1104572..1105180 (+) 609 WP_015218767.1 precorrin-8X methylmutase -
  CYAN10605_RS04540 (Cyan10605_0907) rsmD 1105203..1105751 (+) 549 WP_015218768.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  CYAN10605_RS04545 (Cyan10605_0908) - 1106132..1107277 (-) 1146 WP_015218769.1 PP2C family protein-serine/threonine phosphatase -
  CYAN10605_RS04550 (Cyan10605_0909) pilB/pilB1 1107703..1109739 (-) 2037 WP_015218770.1 GspE/PulE family protein Machinery gene
  CYAN10605_RS19430 - 1109851..1109991 (+) 141 WP_342596800.1 recombinase family protein -
  CYAN10605_RS04555 (Cyan10605_0910) - 1110074..1110346 (+) 273 WP_015218771.1 hypothetical protein -
  CYAN10605_RS04560 (Cyan10605_0911) - 1110555..1111781 (-) 1227 WP_015218772.1 RNA-guided endonuclease TnpB family protein -
  CYAN10605_RS04565 (Cyan10605_0912) - 1112063..1112824 (+) 762 WP_015218773.1 hypothetical protein -
  CYAN10605_RS04570 (Cyan10605_0913) - 1112802..1113845 (+) 1044 WP_015218774.1 aromatic ring-hydroxylating dioxygenase subunit alpha -

Sequence

Protein


Download         Length: 678 a.a.        Molecular weight: 75784.82 Da        Isoelectric Point: 4.9578

>NTDB_id=55029 CYAN10605_RS04550 WP_015218770.1 1107703..1109739(-) (pilB/pilB1) [Cyanobacterium aponinum PCC 10605]
MTQTPISSASKEKLKTALVSPDYFNPFGNKLIQAGYIDKEDLKRALVQVRNTKQPLVKILENITHKALSPELVRQYKQHQ
LFELKILYGVDCVDPESEEIAADQMTDLIESIMGVQVCRRHKLLPLRRIEGEPPVIVVAMVNPDDLQALDDVKKILRAKG
LDLQRIVITEEDFDKLINRFYEEDKQRQKREEELKEKQKLDQLGDVSDIVDDLDHDLDEAEDENPDGDLTSNDANQAPII
KLVNKILIKALQEGASDIHVEPQETRMRVRLRKDGVLREYFTLPKHITTAVVARFKIMAELDIAERRLPQDGKIRRVFQG
RNVDFRVNCLPSRYGEKVCLRILDNSATQLGLDFLISDEETLAKVRDIASRPFGLILVTGPTGSGKSTTLYSILAERNDP
GVNISTAEDPIEYALEGITQVQVIREKGMDFASILRAFLRQDPDIILVGETRDAETAKTAIEAALTGHLVLTTLHTNDAA
GAIARLDEMGVEPFMISGALLGVLAQRLMRRVCSECKIAYVPTKEELARFGLSVSGEESVTFYKANTLSGEALQQAQANG
TVCQKCGGGGYKGRVGVYEFMVMSEELQKLINRGATTDMIKEKAVEEGMVTILAYSLNLVRQGHTTLEEVERVTFTDSGL
EAELKAKRKSSLTCSGCGAELQQEWLDCPYCMTPRFSE

Nucleotide


Download         Length: 2037 bp        

>NTDB_id=55029 CYAN10605_RS04550 WP_015218770.1 1107703..1109739(-) (pilB/pilB1) [Cyanobacterium aponinum PCC 10605]
ATGACTCAAACTCCTATTTCTTCTGCTTCTAAAGAAAAACTAAAAACAGCCTTAGTCAGTCCAGATTATTTCAATCCCTT
TGGAAATAAACTAATTCAAGCAGGTTACATTGATAAGGAAGATTTAAAAAGGGCGTTGGTACAAGTGAGAAATACTAAAC
AGCCTTTAGTAAAAATCTTAGAAAATATCACCCACAAGGCTTTGTCTCCTGAGTTAGTGCGACAGTACAAACAACATCAA
CTTTTTGAATTAAAAATTCTTTATGGGGTTGATTGTGTTGACCCAGAGTCAGAAGAAATAGCAGCGGATCAAATGACTGA
TTTAATCGAGTCTATTATGGGAGTTCAGGTTTGTCGTCGTCATAAACTTTTACCCTTGCGTCGCATTGAGGGTGAACCGC
CTGTAATTGTTGTTGCTATGGTTAATCCTGATGATTTACAGGCGTTGGATGATGTCAAAAAAATATTACGAGCAAAAGGC
CTTGACTTACAAAGAATTGTTATTACTGAAGAAGATTTTGATAAGTTAATTAACAGGTTTTATGAAGAAGATAAGCAAAG
ACAAAAAAGAGAAGAAGAGTTAAAAGAAAAGCAAAAATTAGATCAGTTAGGGGATGTTAGTGATATTGTTGATGATTTGG
ATCATGATTTAGATGAAGCTGAAGACGAAAATCCAGATGGTGATTTGACTTCTAATGATGCTAATCAAGCCCCTATTATC
AAGTTGGTTAATAAAATTCTCATCAAGGCTTTACAAGAAGGAGCATCAGATATTCATGTTGAACCCCAAGAAACCAGAAT
GAGGGTGCGTTTGCGCAAAGATGGGGTTTTAAGGGAATATTTTACTCTTCCTAAACATATTACAACTGCGGTGGTAGCTC
GTTTCAAAATCATGGCTGAGTTGGATATTGCAGAACGCCGTTTACCTCAAGATGGGAAAATTCGTCGGGTGTTTCAGGGA
AGAAATGTGGATTTTCGAGTTAACTGTTTGCCTAGTCGTTACGGTGAAAAGGTCTGTTTAAGGATATTAGATAATTCGGC
TACTCAATTAGGTTTAGACTTTTTAATCTCGGACGAGGAAACATTGGCAAAAGTTAGAGATATTGCCAGTCGTCCTTTTG
GTTTAATTTTGGTTACAGGTCCTACAGGTTCGGGTAAGTCCACAACTCTCTATTCTATCCTAGCGGAGAGAAATGATCCG
GGAGTGAACATAAGTACGGCGGAAGACCCTATTGAGTATGCTTTAGAAGGAATCACTCAGGTGCAAGTAATCCGAGAAAA
AGGTATGGATTTCGCTTCAATTCTTCGGGCTTTTCTCAGACAAGACCCTGATATTATTCTGGTGGGGGAAACACGGGACG
CTGAAACCGCAAAAACTGCGATCGAAGCCGCTTTGACTGGACACTTGGTTTTAACCACTCTACATACTAATGATGCGGCA
GGTGCGATCGCACGTTTGGACGAAATGGGGGTTGAACCCTTTATGATTTCTGGTGCATTGTTAGGGGTTTTGGCACAAAG
ATTAATGCGAAGAGTTTGTAGTGAGTGTAAAATTGCTTATGTTCCTACTAAAGAAGAATTAGCCCGTTTTGGTTTATCCG
TATCTGGAGAAGAATCTGTTACCTTTTATAAAGCGAATACTTTGTCAGGAGAAGCCCTACAACAAGCCCAAGCGAATGGC
ACGGTTTGCCAAAAATGTGGTGGCGGTGGTTATAAAGGGCGTGTGGGTGTTTATGAGTTTATGGTTATGAGTGAAGAGTT
GCAAAAACTCATTAACCGAGGAGCAACCACTGACATGATTAAAGAAAAGGCTGTTGAAGAAGGAATGGTAACGATTTTAG
CCTATAGTTTAAATCTAGTTCGTCAAGGTCATACAACCTTAGAAGAAGTTGAAAGGGTAACATTTACTGATTCTGGTTTG
GAAGCAGAATTGAAGGCTAAACGAAAATCATCTTTAACCTGTAGTGGCTGTGGAGCAGAATTACAACAGGAATGGTTAGA
TTGTCCTTATTGTATGACTCCTCGTTTCAGTGAGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(245-511)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(31-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9Z1J7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

68.798

96.903

0.667
  pilF Thermus thermophilus HB27

41.214

92.33

0.381
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.809

92.625

0.369

Multiple sequence alignment