Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   C4C32_RS23550 Genome accession   NZ_CP072011
Coordinates   5355122..5356465 (+) Length   447 a.a.
NCBI ID   WP_053192135.1    Uniprot ID   A0A8B6UNL8
Organism   Pseudomonas corrugata strain 3prime     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5350122..5361465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4C32_RS23530 (C4C32_23530) pgeF 5350336..5351061 (-) 726 WP_024780728.1 peptidoglycan editing factor PgeF -
  C4C32_RS23535 (C4C32_23535) rluD 5351058..5352020 (-) 963 WP_024780729.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C4C32_RS23540 (C4C32_23540) - 5352171..5353187 (+) 1017 WP_055137417.1 outer membrane protein assembly factor BamD -
  C4C32_RS28360 - 5353313..5353546 (+) 234 WP_080686285.1 PP0621 family protein -
  C4C32_RS23545 (C4C32_23545) pilS 5353536..5355125 (+) 1590 WP_024780731.1 ATP-binding protein Regulator
  C4C32_RS23550 (C4C32_23550) pilR 5355122..5356465 (+) 1344 WP_053192135.1 sigma-54 dependent transcriptional regulator Regulator
  C4C32_RS23555 (C4C32_23555) - 5356658..5357023 (-) 366 WP_055135757.1 DUF6124 family protein -
  C4C32_RS23560 (C4C32_23560) thiO 5357661..5358761 (-) 1101 WP_024781125.1 glycine oxidase ThiO -
  C4C32_RS23565 (C4C32_23565) - 5358818..5359219 (-) 402 WP_024781124.1 type IV pilin protein -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 50207.54 Da        Isoelectric Point: 6.1405

>NTDB_id=549888 C4C32_RS23550 WP_053192135.1 5355122..5356465(+) (pilR) [Pseudomonas corrugata strain 3prime]
MNTRSRQRILIVDDEPDIRELLDITLGRMKLDTRSARNLAEARSLLADEAFDLCLTDMRLPDGTGLELVQHIQQRFPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPATVPTTIDRCLLGDSPPMRGVRKQIEKLARSQAP
VYISGESGCGKELVARLIHEQGPRSSQGFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVAD
LPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRVPSLRERREDIEPLAN
HMLQRLATSTGNPAARLHPQALEALRNYRFPGNVRELENMLERAYTLCEHQQIEADDLRLAESNGITDTTNPELMRVDNL
EDYLEDVERKVILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=549888 C4C32_RS23550 WP_053192135.1 5355122..5356465(+) (pilR) [Pseudomonas corrugata strain 3prime]
TTGAATACGCGCTCACGGCAACGGATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CAGGATGAAACTCGATACCCGCAGCGCCAGGAACCTTGCCGAGGCCCGATCCCTGCTGGCGGACGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGTACCGGCCTGGAACTGGTGCAGCACATCCAACAGCGCTTCCCGCAACTGCCG
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGGGCTTTTGACTTCCTGACCAA
ACCGGTCGACCTGGGTCGTCTGCGGGAACTGGTGACCAGCGCCCTGCGCCTGCCGCCGGCCACCGTCCCGACCACCATCG
ATCGCTGCCTGTTGGGCGACTCCCCGCCGATGCGCGGCGTGCGCAAACAGATCGAAAAGCTGGCCCGCAGCCAGGCGCCG
GTTTACATCAGCGGGGAGTCCGGCTGTGGCAAGGAACTGGTGGCACGGCTGATCCACGAACAAGGACCCCGCTCCAGTCA
GGGCTTTGTGCCGGTCAACTGTGGAGCCATTCCGACAGAACTGATGGAAAGCGAGTTTTTCGGCCATCGAAAAGGCAGCT
TCAGCGGTGCCATCGAGGACAAGCCCGGTCTGTTCCAGGCCGCCCACGGTGGCACCCTGTTCCTCGATGAAGTGGCTGAC
CTGCCCCTGGCGATGCAGGTCAAGCTGCTGCGAGCGATCCAGGAAAAGGCCGTGCGCGCCGTTGGCGGCCAGCAGGAGGA
AGTGGTGGATGTCCGCATCCTCTGTGCCACCCATAAGGATCTGGACGGCGAAGTCGCCGCCGGACGCTTTCGCCAGGATC
TGTACTATCGACTGAACGTCATCGAACTCCGCGTCCCGTCCCTGCGCGAGCGTCGCGAAGACATCGAACCGTTGGCCAAC
CACATGCTCCAGCGCCTGGCGACCAGCACCGGCAACCCCGCCGCCAGACTCCATCCCCAAGCCCTCGAGGCCCTTCGAAA
CTACCGCTTCCCCGGCAACGTGCGAGAGCTGGAGAACATGCTCGAACGGGCCTACACCCTCTGCGAACACCAACAGATCG
AAGCCGACGACCTGCGCCTGGCCGAAAGCAATGGCATCACCGACACCACCAACCCCGAGTTGATGCGGGTCGACAACCTG
GAAGACTATCTGGAGGACGTCGAACGCAAGGTCATCCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACCGCCGCAGC
GCAGCGATTGAAGCTGTCATTTCGGTCAATGCGGTATCGGTTGAAGAAATTGGGGTTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(404-444)

Sigma-54 interaction domain (Sigma54_activat)

(138-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B6UNL8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.73

99.329

0.792
  pilR Acinetobacter baumannii strain A118

49.237

100

0.506