Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   C4C32_RS23545 Genome accession   NZ_CP072011
Coordinates   5353536..5355125 (+) Length   529 a.a.
NCBI ID   WP_024780731.1    Uniprot ID   A0A8B6UNL7
Organism   Pseudomonas corrugata strain 3prime     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5348536..5360125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4C32_RS23530 (C4C32_23530) pgeF 5350336..5351061 (-) 726 WP_024780728.1 peptidoglycan editing factor PgeF -
  C4C32_RS23535 (C4C32_23535) rluD 5351058..5352020 (-) 963 WP_024780729.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C4C32_RS23540 (C4C32_23540) - 5352171..5353187 (+) 1017 WP_055137417.1 outer membrane protein assembly factor BamD -
  C4C32_RS28360 - 5353313..5353546 (+) 234 WP_080686285.1 PP0621 family protein -
  C4C32_RS23545 (C4C32_23545) pilS 5353536..5355125 (+) 1590 WP_024780731.1 ATP-binding protein Regulator
  C4C32_RS23550 (C4C32_23550) pilR 5355122..5356465 (+) 1344 WP_053192135.1 sigma-54 dependent transcriptional regulator Regulator
  C4C32_RS23555 (C4C32_23555) - 5356658..5357023 (-) 366 WP_055135757.1 DUF6124 family protein -
  C4C32_RS23560 (C4C32_23560) thiO 5357661..5358761 (-) 1101 WP_024781125.1 glycine oxidase ThiO -
  C4C32_RS23565 (C4C32_23565) - 5358818..5359219 (-) 402 WP_024781124.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58569.06 Da        Isoelectric Point: 6.7503

>NTDB_id=549887 C4C32_RS23545 WP_024780731.1 5353536..5355125(+) (pilS) [Pseudomonas corrugata strain 3prime]
MTTEASSPRVRQTQRLLRLYHLYRLSIGITLVLLISSNMDNRLLEFANDDLLRSGSWLYLVLNILLVVFLENTRSPARLF
GLALTDVLLLSWLFFAAGGAPSAIGNLLIVSVAIGNTLLRGRIGLLIAAVATIGIVGSSFFLGLHDSNPPGSYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAEQRASEVTSLETLNALILQRMRTGILVLDRQHRVQLANESALNLLGRHDLVGQPID
NDSTALVDSLNVWLNNPSLRPPSLSIPGTGLTLQPSFIALGHNEQHQILVFLEDLAQVAQHAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNDADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTAPQRLDLRTWLEQFVQQARESMAAH
QQLHLSIAPGDFTTLMDPDQLTQVLDNLLRNAWRHSAEAHERAEAWLELFVDPYSHLPTLDIIDNGPGVTPDQQVHLFEP
FFTTSNQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=549887 C4C32_RS23545 WP_024780731.1 5353536..5355125(+) (pilS) [Pseudomonas corrugata strain 3prime]
GTGACCACTGAGGCTTCAAGCCCTCGCGTCAGACAGACGCAGCGCCTGCTGCGTCTCTATCACCTGTACCGCTTGAGCAT
CGGCATCACCCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGGAGTTCGCCAACGACGACCTGCTGCGCA
GTGGCAGCTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTGTTCCTTGAAAACACCCGAAGCCCTGCCCGGCTGTTT
GGCCTGGCCCTGACCGATGTGTTGCTGCTGTCATGGCTGTTCTTCGCGGCAGGCGGTGCCCCCAGTGCCATTGGCAATCT
GCTCATTGTTTCGGTGGCCATTGGCAATACGCTGCTGCGCGGCCGAATCGGCCTGTTGATCGCGGCCGTCGCCACGATCG
GCATCGTCGGGTCGAGTTTCTTCCTTGGCCTGCACGACTCGAACCCTCCCGGCAGTTATTTGCAGGCCGGTACCCTGGGA
GCGCTGTGCTTCGCCGCTGCGCTGCTGGTACAAGGCCTGACCAGGCGACTGGAAGCCAGCGAAACCCTCGCCGAGCAGCG
GGCCAGCGAAGTGACCAGCCTTGAAACCCTCAACGCCTTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTTGATC
GCCAACACCGGGTGCAATTGGCCAACGAAAGCGCTTTGAACCTGTTGGGCAGGCACGACCTGGTCGGCCAGCCAATCGAC
AACGACTCCACCGCACTCGTCGACAGTCTGAACGTGTGGCTGAACAACCCCAGCCTGCGCCCACCCAGCCTGTCCATCCC
CGGCACGGGCCTGACCCTGCAACCGAGCTTCATCGCCCTGGGGCATAACGAACAGCATCAAATCCTGGTGTTCCTCGAAG
ATCTGGCCCAGGTCGCCCAACATGCCCAGCAGCTGAAACTCGCCTCGCTGGGGCGCCTCACCGCCGGCATCGCCCATGAA
ATCCGCAACCCCCTGGGGGCAATCAGCCATGCGGCGCAATTACTGCGCGAGTCCGAGGAACTGAACGACGCCGACCGGCG
TCTGACGCAGATTATTCAAGACCACTCCCAACGAATGAATCGCGTCATTGAAAACGTCCTGCAACTGTCCCGGCGCCAGC
AAACCGCGCCTCAGCGCCTGGATCTGCGGACCTGGCTCGAGCAGTTTGTCCAACAAGCCCGCGAAAGCATGGCCGCGCAC
CAGCAATTGCATCTGAGCATCGCCCCGGGCGACTTCACCACGCTCATGGACCCCGATCAATTGACCCAGGTGCTCGACAA
CCTGCTGCGCAACGCCTGGCGCCACAGCGCCGAGGCCCATGAGCGGGCCGAGGCCTGGCTGGAACTGTTCGTCGATCCCT
ACAGCCATCTCCCCACGCTGGACATCATCGACAACGGCCCCGGCGTGACACCGGACCAGCAGGTGCATCTGTTCGAGCCG
TTCTTCACCACCAGCAACCAGGGCACCGGCCTTGGTCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCGCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATTACTTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B6UNL7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.155

97.732

0.588