NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	J4Z26_RS11375	Genome accession	NZ_CP071988
Coordinates	2394926..2395435 (-)	Length	169 a.a.
NCBI ID	WP_001831333.1	Uniprot ID	A0A2G7I1N0
Organism	Staphylococcus epidermidis strain CBPA-ST-10002 isolate HPB10235
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2389926..2400435

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4Z26_RS11335 (J4Z26_002259)	-	2390082..2390705 (+)	624	WP_002497460.1	NDxxF motif lipoprotein	-
J4Z26_RS11340 (J4Z26_002260)	-	2390925..2391302 (+)	378	WP_002437185.1	hypothetical protein	-
J4Z26_RS11345 (J4Z26_002261)	-	2391718..2392308 (-)	591	WP_002497461.1	histidine phosphatase family protein	-
J4Z26_RS11350 (J4Z26_002262)	-	2392329..2392961 (-)	633	WP_001830914.1	LysE family translocator	-
J4Z26_RS11915	-	2393124..2393213 (+)	90	Protein_2195	hypothetical protein	-
J4Z26_RS11355 (J4Z26_002263)	-	2393433..2393687 (-)	255	WP_001832461.1	GlsB/YeaQ/YmgE family stress response membrane protein	-
J4Z26_RS11360 (J4Z26_002264)	-	2393909..2394169 (+)	261	WP_001830921.1	hypothetical protein	-
J4Z26_RS11365	-	2394283..2394455 (+)	173	Protein_2198	XRE family transcriptional regulator	-
J4Z26_RS11370 (J4Z26_002265)	rpsR	2394639..2394881 (-)	243	WP_001831354.1	30S ribosomal protein S18	-
J4Z26_RS11375 (J4Z26_002266)	ssbA	2394926..2395435 (-)	510	WP_001831333.1	single-stranded DNA-binding protein	Machinery gene
J4Z26_RS11380 (J4Z26_002267)	rpsF	2395458..2395754 (-)	297	WP_001831345.1	30S ribosomal protein S6	-
J4Z26_RS11385 (J4Z26_002268)	-	2396139..2396948 (+)	810	WP_001831342.1	GH25 family lysozyme	-
J4Z26_RS11390 (J4Z26_002269)	-	2397022..2397213 (+)	192	WP_001831355.1	hypothetical protein	-
J4Z26_RS11395 (J4Z26_002270)	ychF	2397446..2398543 (-)	1098	WP_002497463.1	redox-regulated ATPase YchF	-
J4Z26_RS11400 (J4Z26_002271)	-	2398555..2398758 (-)	204	WP_001831361.1	DUF951 domain-containing protein	-
J4Z26_RS11405 (J4Z26_002272)	-	2398779..2399654 (-)	876	WP_001832526.1	mechanosensitive ion channel family protein	-

Sequence

Protein

Download Length: 169 a.a. Molecular weight: 18680.20 Da Isoelectric Point: 4.9056

                                >NTDB_id=549799 J4Z26_RS11375 WP_001831333.1 2394926..2395435(-) (ssbA) [Staphylococcus epidermidis strain CBPA-ST-10002 isolate HPB10235]

MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR

SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI

DISDDDLPF

Nucleotide

Download Length: 510 bp

                                >NTDB_id=549799 J4Z26_RS11375 WP_001831333.1 2394926..2395435(-) (ssbA) [Staphylococcus epidermidis strain CBPA-ST-10002 isolate HPB10235]

ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC

GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACTGTGTAGTCT

TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT

AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAGTTCCTTGAACCTAAAAA

TGCACAACATGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC

AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT

GATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A2G7I1N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	64.607	100	0.68
ssb	Latilactobacillus sakei subsp. sakei 23K	55.172	100	0.568
ssbB	Bacillus subtilis subsp. subtilis str. 168	60.377	62.722	0.379

Detailed information NTG0549799