Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J5D26_RS01670 Genome accession   NZ_CP071985
Coordinates   344335..345135 (+) Length   266 a.a.
NCBI ID   WP_209508944.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5119     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 339335..350135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D26_RS01635 (J5D26_01635) pseH 339830..340372 (+) 543 WP_209508938.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  J5D26_RS01640 (J5D26_01640) - 340305..341243 (-) 939 WP_209508939.1 tetraacyldisaccharide 4'-kinase -
  J5D26_RS01645 (J5D26_01645) - 341240..342022 (-) 783 WP_209508940.1 NAD+ synthase -
  J5D26_RS01655 (J5D26_01655) ilvC 342271..343263 (+) 993 WP_209508941.1 ketol-acid reductoisomerase -
  J5D26_RS01660 (J5D26_01660) minD 343287..344093 (+) 807 WP_209508942.1 septum site-determining protein MinD -
  J5D26_RS01665 (J5D26_01665) minE 344090..344323 (+) 234 WP_209508943.1 cell division topological specificity factor MinE -
  J5D26_RS01670 (J5D26_01670) dprA 344335..345135 (+) 801 WP_209508944.1 DNA-processing protein DprA Machinery gene
  J5D26_RS01675 (J5D26_01675) dprB 345132..345536 (+) 405 WP_209508945.1 Holliday junction resolvase RuvX Machinery gene
  J5D26_RS01680 (J5D26_01680) - 345760..346541 (+) 782 Protein_323 tetratricopeptide repeat protein -
  J5D26_RS01685 (J5D26_01685) - 346727..347065 (+) 339 WP_165515202.1 hypothetical protein -
  J5D26_RS01690 (J5D26_01690) - 347049..347609 (+) 561 WP_001925803.1 hypothetical protein -
  J5D26_RS01695 (J5D26_01695) - 347808..348689 (-) 882 WP_209508947.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29892.66 Da        Isoelectric Point: 7.3966

>NTDB_id=549715 J5D26_RS01670 WP_209508944.1 344335..345135(+) (dprA) [Helicobacter pylori strain MT5119]
MKSHFQYSALENIPKDFDTLKDPPKKLYCVGDTKLLDAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMFSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPIKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDHHLKEMPEMEDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHIVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=549715 J5D26_RS01670 WP_209508944.1 344335..345135(+) (dprA) [Helicobacter pylori strain MT5119]
ATGAAAAGCCACTTCCAATACAGCGCGTTAGAGAATATCCCTAAAGACTTTGATACGCTCAAAGACCCCCCTAAAAAGCT
CTATTGTGTGGGCGATACCAAGCTTTTGGACGCGCCTTTAAAAGTGGCGATCATAGGCACAAGAAGACCCACCCCTTACA
GCAAGCAACACACGATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGGGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTGCCAAAAACGATCATGTTTTCGCCTTGCAGTTTGGATTTTATCTATCCTACGAA
CAACCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAGAAAGACTTCATGCCCATTAAAG
GCTCTTTTTTAGCGAGAAACCGCCTAGTGATCGCTTTAAGCGATGCGGTCATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGTGCGAGATTAGCCCAGAAATACCAAAAACCCTTGTTTGTTTTACCCCAACGCTTGAATGAGAGCGACGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACC
ACCATTTAAAAGAAATGCCTGAAATGGAAGATGAATTTTTAGAATATTGCGCGAAAAACCCTAGCTATGAAGAGGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATCAAGCGCATCAATCATATCGTGGTGTTAGCATG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(11-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

97.368

100

0.974
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.537

81.203

0.402