Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   J5D26_RS01675 Genome accession   NZ_CP071985
Coordinates   345132..345536 (+) Length   134 a.a.
NCBI ID   WP_209508945.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5119     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 340132..350536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D26_RS01640 (J5D26_01640) - 340305..341243 (-) 939 WP_209508939.1 tetraacyldisaccharide 4'-kinase -
  J5D26_RS01645 (J5D26_01645) - 341240..342022 (-) 783 WP_209508940.1 NAD+ synthase -
  J5D26_RS01655 (J5D26_01655) ilvC 342271..343263 (+) 993 WP_209508941.1 ketol-acid reductoisomerase -
  J5D26_RS01660 (J5D26_01660) minD 343287..344093 (+) 807 WP_209508942.1 septum site-determining protein MinD -
  J5D26_RS01665 (J5D26_01665) minE 344090..344323 (+) 234 WP_209508943.1 cell division topological specificity factor MinE -
  J5D26_RS01670 (J5D26_01670) dprA 344335..345135 (+) 801 WP_209508944.1 DNA-processing protein DprA Machinery gene
  J5D26_RS01675 (J5D26_01675) dprB 345132..345536 (+) 405 WP_209508945.1 Holliday junction resolvase RuvX Machinery gene
  J5D26_RS01680 (J5D26_01680) - 345760..346541 (+) 782 Protein_323 tetratricopeptide repeat protein -
  J5D26_RS01685 (J5D26_01685) - 346727..347065 (+) 339 WP_165515202.1 hypothetical protein -
  J5D26_RS01690 (J5D26_01690) - 347049..347609 (+) 561 WP_001925803.1 hypothetical protein -
  J5D26_RS01695 (J5D26_01695) - 347808..348689 (-) 882 WP_209508947.1 RluA family pseudouridine synthase -
  J5D26_RS01700 (J5D26_01700) recJ 348689..350239 (-) 1551 WP_209508948.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15205.69 Da        Isoelectric Point: 9.1637

>NTDB_id=549716 J5D26_RS01675 WP_209508945.1 345132..345536(+) (dprB) [Helicobacter pylori strain MT5119]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKSIQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDNSSIEAYDNLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=549716 J5D26_RS01675 WP_209508945.1 345132..345536(+) (dprB) [Helicobacter pylori strain MT5119]
ATGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGAGAAAAAAGCATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACCCACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCCAGTATAGAAGCTTATGATAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.455

98.507

0.94