Detailed information NTG0549690

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: J5D20_RS00215
• Genome accession: NZ_CP071984
• Coordinates: 39687..40823 (+)
• Length: 378 a.a.
• NCBI ID: WP_209525935.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5114
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 34687..45823

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D20_RS00180 (J5D20_00180)	panD	35114..35467 (+)	354	WP_000142254.1	aspartate 1-decarboxylase	-
J5D20_RS00185 (J5D20_00185)	-	35470..35772 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
J5D20_RS00190 (J5D20_00190)	-	35772..36776 (+)	1005	WP_209526574.1	PDZ domain-containing protein	-
J5D20_RS00195 (J5D20_00195)	comB6	36784..37839 (+)	1056	WP_209526572.1	P-type conjugative transfer protein TrbL	Machinery gene
J5D20_RS00200 (J5D20_00200)	comB7	37855..37968 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
J5D20_RS00205 (J5D20_00205)	comB8	37965..38708 (+)	744	WP_209525931.1	virB8 family protein	Machinery gene
J5D20_RS00210 (J5D20_00210)	comB9	38708..39694 (+)	987	WP_209528003.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
J5D20_RS00215 (J5D20_00215)	comB10	39687..40823 (+)	1137	WP_209525935.1	DNA type IV secretion system protein ComB10	Machinery gene
J5D20_RS00220 (J5D20_00220)	-	40893..42305 (+)	1413	WP_209525937.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
J5D20_RS00225 (J5D20_00225)	gmd	42346..43491 (+)	1146	WP_209528005.1	GDP-mannose 4,6-dehydratase	-
J5D20_RS00230 (J5D20_00230)	-	43484..44416 (+)	933	WP_209525938.1	GDP-L-fucose synthase	-
J5D20_RS08175	-	44808..45101 (-)	294	WP_097708205.1	hypothetical protein	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42138.61 Da
• Isoelectric Point: 9.7473

>NTDB_id=549690 J5D20_RS00215 WP_209525935.1 39687..40823(+) (comB10) [Helicobacter pylori strain MT5114]
MNKWLKGAIVFIGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMDPKANTTPPKKDFSPKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDSFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=549690 J5D20_RS00215 WP_209525935.1 39687..40823(+) (comB10) [Helicobacter pylori strain MT5114]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTATAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCCACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTACTAGCCCTCCCATGGATCCAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCCAAAACAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAGCAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATAGTTTCACTAACCTTAAAGAA
AAAGACATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCTTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTTGCGAGCATGGGAAAGGCTGTTTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGAATCATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAATAGAGGTAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTCGTCAATCAAATTTTAAGAGACAAAAGCAAGATCGCCCCCATTGTGGT
GATTAGAGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.825	100	0.968