Detailed information NTG0549686

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: J5D20_RS00195
• Genome accession: NZ_CP071984
• Coordinates: 36784..37839 (+)
• Length: 351 a.a.
• NCBI ID: WP_209526572.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5114
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31784..42839

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D20_RS00165 (J5D20_00165)	-	32206..32619 (+)	414	WP_001023005.1	universal stress protein	-
J5D20_RS00170 (J5D20_00170)	-	32621..32896 (+)	276	WP_209525927.1	ATP-dependent Clp protease adaptor ClpS	-
J5D20_RS00175 (J5D20_00175)	-	32896..35124 (+)	2229	WP_209525929.1	ATP-dependent Clp protease ATP-binding subunit	-
J5D20_RS00180 (J5D20_00180)	panD	35114..35467 (+)	354	WP_000142254.1	aspartate 1-decarboxylase	-
J5D20_RS00185 (J5D20_00185)	-	35470..35772 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
J5D20_RS00190 (J5D20_00190)	-	35772..36776 (+)	1005	WP_209526574.1	PDZ domain-containing protein	-
J5D20_RS00195 (J5D20_00195)	comB6	36784..37839 (+)	1056	WP_209526572.1	P-type conjugative transfer protein TrbL	Machinery gene
J5D20_RS00200 (J5D20_00200)	comB7	37855..37968 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
J5D20_RS00205 (J5D20_00205)	comB8	37965..38708 (+)	744	WP_209525931.1	virB8 family protein	Machinery gene
J5D20_RS00210 (J5D20_00210)	comB9	38708..39694 (+)	987	WP_209528003.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
J5D20_RS00215 (J5D20_00215)	comB10	39687..40823 (+)	1137	WP_209525935.1	DNA type IV secretion system protein ComB10	Machinery gene
J5D20_RS00220 (J5D20_00220)	-	40893..42305 (+)	1413	WP_209525937.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39883.86 Da
• Isoelectric Point: 8.8155

>NTDB_id=549686 J5D20_RS00195 WP_209526572.1 36784..37839(+) (comB6) [Helicobacter pylori strain MT5114]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASTLLEALWFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKNWRSVVIICLKKCFALGFYKPFLLLVGFLNVSVTKALMDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSTNLSQNALNSLQYITTSPAPSPISTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTIDTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=549686 J5D20_RS00195 WP_209526572.1 36784..37839(+) (comB6) [Helicobacter pylori strain MT5114]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTTTTCAGCGCTAGCACGCTTTTAGAGGCGTTATGGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAATTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTCAATCATGGTTTTTATGCCCTTAGCT
TCATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAAACTGGAGGAGCGTTGTGATTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATGGACGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTCAAAGAAACTTACAAACTCGCCACCAATTTGAGCACTAACCTCAGCCAAAACGCTCTCAATTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTCCTATTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAGGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAGATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	93.162	100	0.932