Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   J5D20_RS00205 Genome accession   NZ_CP071984
Coordinates   37965..38708 (+) Length   247 a.a.
NCBI ID   WP_209525931.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5114     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32965..43708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D20_RS00180 (J5D20_00180) panD 35114..35467 (+) 354 WP_000142254.1 aspartate 1-decarboxylase -
  J5D20_RS00185 (J5D20_00185) - 35470..35772 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  J5D20_RS00190 (J5D20_00190) - 35772..36776 (+) 1005 WP_209526574.1 PDZ domain-containing protein -
  J5D20_RS00195 (J5D20_00195) comB6 36784..37839 (+) 1056 WP_209526572.1 P-type conjugative transfer protein TrbL Machinery gene
  J5D20_RS00200 (J5D20_00200) comB7 37855..37968 (+) 114 WP_001217877.1 hypothetical protein Machinery gene
  J5D20_RS00205 (J5D20_00205) comB8 37965..38708 (+) 744 WP_209525931.1 virB8 family protein Machinery gene
  J5D20_RS00210 (J5D20_00210) comB9 38708..39694 (+) 987 WP_209528003.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  J5D20_RS00215 (J5D20_00215) comB10 39687..40823 (+) 1137 WP_209525935.1 DNA type IV secretion system protein ComB10 Machinery gene
  J5D20_RS00220 (J5D20_00220) - 40893..42305 (+) 1413 WP_209525937.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  J5D20_RS00225 (J5D20_00225) gmd 42346..43491 (+) 1146 WP_209528005.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28701.90 Da        Isoelectric Point: 8.9891

>NTDB_id=549688 J5D20_RS00205 WP_209525931.1 37965..38708(+) (comB8) [Helicobacter pylori strain MT5114]
MKEKPFNSDQMAFLEELLSHQEKHLESKLSGFSVNDLDMQSVFRLERNRLKIAYRLLGLMSFIALVLAIVLISILPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
TQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRSD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=549688 J5D20_RS00205 WP_209525931.1 37965..38708(+) (comB8) [Helicobacter pylori strain MT5114]
ATGAAAGAAAAGCCTTTCAATAGCGATCAGATGGCTTTTTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAGAG
CAAGCTTTCTGGTTTTTCGGTGAACGATTTGGACATGCAAAGCGTGTTTCGGCTAGAAAGGAACCGCTTGAAAATCGCTT
ACAGGCTTTTAGGTTTGATGAGCTTTATCGCGCTTGTCTTAGCGATCGTTTTAATCAGTATCCTGCCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCCCGCT
ATGAACTGGTGCGCTTGCAAAGCAGCTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACGCAAAACAGCATCTAT
ACGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
GTCCATTGCGGCTAAACTTTTGAATGAAAACAAGCTCGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGTTACAGCATCACTGAAATC
GCACCGACTAATAGGAGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

95.142

100

0.951