Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J5D24_RS01645 Genome accession   NZ_CP071978
Coordinates   342600..343400 (+) Length   266 a.a.
NCBI ID   WP_097706941.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5125     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 337600..348400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D24_RS01610 (J5D24_01610) pseH 338094..338636 (+) 543 WP_097706937.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  J5D24_RS01615 (J5D24_01615) - 338569..339507 (-) 939 WP_097706938.1 tetraacyldisaccharide 4'-kinase -
  J5D24_RS01620 (J5D24_01620) - 339504..340286 (-) 783 WP_097706939.1 NAD+ synthase -
  J5D24_RS01630 (J5D24_01630) ilvC 340535..341527 (+) 993 WP_097706940.1 ketol-acid reductoisomerase -
  J5D24_RS01635 (J5D24_01635) minD 341552..342358 (+) 807 WP_079359354.1 septum site-determining protein MinD -
  J5D24_RS01640 (J5D24_01640) minE 342355..342588 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  J5D24_RS01645 (J5D24_01645) dprA 342600..343400 (+) 801 WP_097706941.1 DNA-processing protein DprA Machinery gene
  J5D24_RS01650 (J5D24_01650) dprB 343397..343801 (+) 405 WP_097706942.1 Holliday junction resolvase RuvX Machinery gene
  J5D24_RS01655 (J5D24_01655) - 344087..344878 (+) 792 WP_097706943.1 tetratricopeptide repeat protein -
  J5D24_RS01660 (J5D24_01660) - 345064..345402 (+) 339 WP_000699880.1 hypothetical protein -
  J5D24_RS01665 (J5D24_01665) - 345386..345946 (+) 561 WP_097706944.1 hypothetical protein -
  J5D24_RS01670 (J5D24_01670) - 346035..346916 (-) 882 WP_097706945.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29876.72 Da        Isoelectric Point: 7.3773

>NTDB_id=549629 J5D24_RS01645 WP_097706941.1 342600..343400(+) (dprA) [Helicobacter pylori strain MT5125]
MKSHFQYSALENIPKAFDILKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDLIYPTNNHKVIQEIAQNGLILSEYEKDFMPIKGSFLARNRLVIALSDAVIIPQADLQSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMEDEFLEYFAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHIVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=549629 J5D24_RS01645 WP_097706941.1 342600..343400(+) (dprA) [Helicobacter pylori strain MT5125]
ATGAAAAGCCATTTCCAATACAGCGCGCTAGAGAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCTCCTAAAAAACT
CTATTGTGTGGGCGATACCAAGCTTTTAGAAGCGCCTTTAAAAGTGGCTATCATAGGCACAAGAAGACCCACCCCTTACA
GCAAGCAACACACGATCACTCTAGCTAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGGGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTGCCAAAAACGATCATGCTTTCGCCTTGCAGTTTGGATTTGATCTATCCTACGAA
CAATCATAAAGTGATCCAAGAAATCGCGCAAAACGGCCTGATTTTAAGCGAATATGAAAAAGACTTCATGCCCATTAAAG
GCTCTTTTTTAGCGAGAAACCGCCTGGTGATCGCTTTAAGCGATGCGGTCATTATCCCCCAAGCGGATTTACAAAGCGGC
TCTATGAGCAGCGCGAGATTAGCCCAGAAATACCAAAAACCCTTGTTTGTTTTACCCCAACGCTTGAATGAGAGCGACGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGATT
ACCATTTAAAAGAAATGCCTGAAATGGAAGATGAATTTTTAGAATATTTTGCGAAAAACCCTAGCTATGAAGAAGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATTAAGCGCATCAATCACATTGTGGTGTTAGCATG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

97.368

100

0.974
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.788

84.962

0.406