Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   J5D24_RS01650 Genome accession   NZ_CP071978
Coordinates   343397..343801 (+) Length   134 a.a.
NCBI ID   WP_097706942.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5125     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 338397..348801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D24_RS01615 (J5D24_01615) - 338569..339507 (-) 939 WP_097706938.1 tetraacyldisaccharide 4'-kinase -
  J5D24_RS01620 (J5D24_01620) - 339504..340286 (-) 783 WP_097706939.1 NAD+ synthase -
  J5D24_RS01630 (J5D24_01630) ilvC 340535..341527 (+) 993 WP_097706940.1 ketol-acid reductoisomerase -
  J5D24_RS01635 (J5D24_01635) minD 341552..342358 (+) 807 WP_079359354.1 septum site-determining protein MinD -
  J5D24_RS01640 (J5D24_01640) minE 342355..342588 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  J5D24_RS01645 (J5D24_01645) dprA 342600..343400 (+) 801 WP_097706941.1 DNA-processing protein DprA Machinery gene
  J5D24_RS01650 (J5D24_01650) dprB 343397..343801 (+) 405 WP_097706942.1 Holliday junction resolvase RuvX Machinery gene
  J5D24_RS01655 (J5D24_01655) - 344087..344878 (+) 792 WP_097706943.1 tetratricopeptide repeat protein -
  J5D24_RS01660 (J5D24_01660) - 345064..345402 (+) 339 WP_000699880.1 hypothetical protein -
  J5D24_RS01665 (J5D24_01665) - 345386..345946 (+) 561 WP_097706944.1 hypothetical protein -
  J5D24_RS01670 (J5D24_01670) - 346035..346916 (-) 882 WP_097706945.1 RluA family pseudouridine synthase -
  J5D24_RS01675 (J5D24_01675) recJ 346916..348466 (-) 1551 WP_097706946.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15192.65 Da        Isoelectric Point: 8.2810

>NTDB_id=549630 J5D24_RS01650 WP_097706942.1 343397..343801(+) (dprB) [Helicobacter pylori strain MT5125]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFVNEDNSSVEAYEILEHLGRKNKRLATKDGRLDSLSACKILERYCQQVLKKD

Nucleotide


Download         Length: 405 bp        

>NTDB_id=549630 J5D24_RS01650 WP_097706942.1 343397..343801(+) (dprB) [Helicobacter pylori strain MT5125]
ATGATTTTAGCGTGCGATGTGGGGCTAAAACGCATTGGCATCGCTGTGCTTTTAAACGGCGTTATCTTGCCTTTGGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAGAACATTCAAGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACTCACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTGTTAATGAAGATAATTCTAGCGTAGAAGCTTATGAAATTTTAGAGCATTTGGGTAGGAAAAACAAGCGGCT
CGCTACCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAAGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAAGG
ACTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

91.667

98.507

0.903