Detailed information NTG0549603

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: J5D22_RS00210
• Genome accession: NZ_CP071977
• Coordinates: 38473..39459 (+)
• Length: 328 a.a.
• NCBI ID: WP_209505938.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5105
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 33473..44459

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D22_RS00180 (J5D22_00180)	panD	34879..35232 (+)	354	WP_000142286.1	aspartate 1-decarboxylase	-
J5D22_RS00185 (J5D22_00185)	-	35235..35537 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
J5D22_RS00190 (J5D22_00190)	-	35537..36541 (+)	1005	WP_209506533.1	PDZ domain-containing protein	-
J5D22_RS00195 (J5D22_00195)	comB6	36549..37604 (+)	1056	WP_209506531.1	P-type conjugative transfer protein TrbL	Machinery gene
J5D22_RS00200 (J5D22_00200)	comB7	37620..37733 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
J5D22_RS00205 (J5D22_00205)	comB8	37730..38473 (+)	744	WP_021186670.1	virB8 family protein	Machinery gene
J5D22_RS00210 (J5D22_00210)	comB9	38473..39459 (+)	987	WP_209505938.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
J5D22_RS00215 (J5D22_00215)	comB10	39452..40588 (+)	1137	WP_209505939.1	DNA type IV secretion system protein ComB10	Machinery gene
J5D22_RS00220 (J5D22_00220)	-	40657..42069 (+)	1413	WP_209505940.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
J5D22_RS00225 (J5D22_00225)	gmd	42110..43255 (+)	1146	WP_209505942.1	GDP-mannose 4,6-dehydratase	-
J5D22_RS00230 (J5D22_00230)	-	43248..44180 (+)	933	WP_021186675.1	GDP-L-fucose synthase	-
J5D22_RS07840	-	44234..44364 (-)	131	Protein_41	anthranilate synthase component I	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 38035.81 Da
• Isoelectric Point: 9.3371

>NTDB_id=549603 J5D22_RS00210 WP_209505938.1 38473..39459(+) (comB9) [Helicobacter pylori strain MT5105]
MRKVLYALMGFLLAFSVLKADDFLEEANETDPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYTNAFIKPQKENQENMAENAPKDAQKNNKPLKEEKEETKEKEEEVIIIGDNTNAMKIIKKDIQKGYKALKSSQRKWYCL
WVCSKKSKLSLMPEEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIR
FVKRNKGE

Nucleotide

• Length: 987 bp

>NTDB_id=549603 J5D22_RS00210 WP_209505938.1 38473..39459(+) (comB9) [Helicobacter pylori strain MT5105]
ATGCGTAAGGTTTTATACGCTCTCATGGGTTTTTTGTTGGCTTTTAGCGTTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGACCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTGATTATTTTCAAGGGCAAACTTATAAAATCCGTTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTGGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTACTCATCAAGCCTTTACAAATCGGCGTGGATTCCAATATCAGCGTGATTGATAGCGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TACTACACTAACGCTTTTATCAAGCCCCAAAAAGAAAATCAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCAAAA
AAATAATAAGCCCCTAAAAGAAGAAAAAGAAGAAACTAAAGAAAAAGAAGAAGAGGTGATAATTATTGGCGATAACACCA
ATGCGATGAAAATTATTAAAAAAGACATCCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTG
TGGGTTTGTTCTAAAAAATCCAAACTCTCCTTAATGCCTGAAGAAATCTTTAACGACAAACAATTCACTTATTTCAAATT
TGATAAAAGATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGA
TTGTGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGTTGGGTAAGGACTATCTGTGTATCCGT
TTTGTCAAAAGGAACAAAGGTGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-319)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.768	100	0.918