Detailed information NTG0549600

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: J5D22_RS00195
• Genome accession: NZ_CP071977
• Coordinates: 36549..37604 (+)
• Length: 351 a.a.
• NCBI ID: WP_209506531.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5105
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31549..42604

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D22_RS00165 (J5D22_00165)	-	31971..32384 (+)	414	WP_001023005.1	universal stress protein	-
J5D22_RS00170 (J5D22_00170)	-	32386..32661 (+)	276	WP_209505937.1	ATP-dependent Clp protease adaptor ClpS	-
J5D22_RS00175 (J5D22_00175)	-	32661..34889 (+)	2229	WP_021172687.1	ATP-dependent Clp protease ATP-binding subunit	-
J5D22_RS00180 (J5D22_00180)	panD	34879..35232 (+)	354	WP_000142286.1	aspartate 1-decarboxylase	-
J5D22_RS00185 (J5D22_00185)	-	35235..35537 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
J5D22_RS00190 (J5D22_00190)	-	35537..36541 (+)	1005	WP_209506533.1	PDZ domain-containing protein	-
J5D22_RS00195 (J5D22_00195)	comB6	36549..37604 (+)	1056	WP_209506531.1	P-type conjugative transfer protein TrbL	Machinery gene
J5D22_RS00200 (J5D22_00200)	comB7	37620..37733 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
J5D22_RS00205 (J5D22_00205)	comB8	37730..38473 (+)	744	WP_021186670.1	virB8 family protein	Machinery gene
J5D22_RS00210 (J5D22_00210)	comB9	38473..39459 (+)	987	WP_209505938.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
J5D22_RS00215 (J5D22_00215)	comB10	39452..40588 (+)	1137	WP_209505939.1	DNA type IV secretion system protein ComB10	Machinery gene
J5D22_RS00220 (J5D22_00220)	-	40657..42069 (+)	1413	WP_209505940.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39788.69 Da
• Isoelectric Point: 8.8165

>NTDB_id=549600 J5D22_RS00195 WP_209506531.1 36549..37604(+) (comB6) [Helicobacter pylori strain MT5105]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSAVALAFMLFAYRSLKEQNFFSASTLLEALWFVGFFALFNY
ALKNPSRFYELFQNAIFIVPNMIAQSLSQSLSNFSNHVLSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIVILVYLEAHVWCSLGVLFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHVQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSANLSQNALNSLQYITTPPASSPISSSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTIDTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=549600 J5D22_RS00195 WP_209506531.1 36549..37604(+) (comB6) [Helicobacter pylori strain MT5105]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGCGGTCGCTTTGGCGTTCATGCTCTTTGCTTACAGGAGTT
TGAAAGAACAGAATTTTTTCAGCGCTAGCACGCTTTTAGAAGCGTTATGGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGTGCCTAATATGATCGCGCAGAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGTGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCGTCATTTTAGTGTATTTGGAAGCGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATGTGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCCTCTCCTATTTCTTCTTCTACAAGCGGAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTGGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAGATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	94.017	100	0.94