Detailed information NTG0549582

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: J4T92_RS00215
• Genome accession: NZ_CP071975
• Coordinates: 39209..40339 (+)
• Length: 376 a.a.
• NCBI ID: WP_209553011.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5118
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 34209..45339

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4T92_RS00180 (J4T92_00180)	panD	34636..34989 (+)	354	WP_209553007.1	aspartate 1-decarboxylase	-
J4T92_RS00185 (J4T92_00185)	-	34992..35294 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
J4T92_RS00190 (J4T92_00190)	-	35294..36298 (+)	1005	WP_209553430.1	PDZ domain-containing protein	-
J4T92_RS00195 (J4T92_00195)	comB6	36306..37361 (+)	1056	WP_209553008.1	P-type conjugative transfer protein TrbL	Machinery gene
J4T92_RS00200 (J4T92_00200)	comB7	37377..37490 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
J4T92_RS00205 (J4T92_00205)	comB8	37487..38230 (+)	744	WP_209553009.1	virB8 family protein	Machinery gene
J4T92_RS00210 (J4T92_00210)	comB9	38230..39216 (+)	987	WP_209553010.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
J4T92_RS00215 (J4T92_00215)	comB10	39209..40339 (+)	1131	WP_209553011.1	DNA type IV secretion system protein ComB10	Machinery gene
J4T92_RS00220 (J4T92_00220)	-	40409..41821 (+)	1413	WP_209553012.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
J4T92_RS00225 (J4T92_00225)	gmd	41863..43008 (+)	1146	WP_209553013.1	GDP-mannose 4,6-dehydratase	-
J4T92_RS00230 (J4T92_00230)	-	43001..43933 (+)	933	WP_209553014.1	GDP-L-fucose synthase	-
J4T92_RS00235 (J4T92_00235)	hypE	44244..45242 (-)	999	WP_209553015.1	hydrogenase expression/formation protein HypE	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41980.54 Da
• Isoelectric Point: 9.8253

>NTDB_id=549582 J4T92_RS00215 WP_209553011.1 39209..40339(+) (comB10) [Helicobacter pylori strain MT5118]
MNKWIKGAVVFVGGFITITSISLIYHQKPKAPINNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDAAIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPMDPKTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDSFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1131 bp

>NTDB_id=549582 J4T92_RS00215 WP_209553011.1 39209..40339(+) (comB10) [Helicobacter pylori strain MT5118]
GTGAATAAGTGGATTAAAGGGGCGGTTGTTTTTGTAGGGGGTTTTATAACGATTACAAGTATTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCATAAATAACCAACCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCCGCCATTAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAGACTTTTAAAAGCCCTCCCATGGATCCAAAAAC
AACCCCCCCTAAAAAAGATTTTTCTTTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATAGTTTCACTAACCTTAAAGAAAAAGAC
ATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCTTTTTTGATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAAGCCGTCTTAATCCCTA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGTCGCATC
ATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGTGGGGGA
ATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAAAGCAAGATCGCCCCCATTGTGGTGATTAG
AGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCGCAGAGT
TTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (171-362)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	95.479	100	0.955