Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   J4T92_RS00210 Genome accession   NZ_CP071975
Coordinates   38230..39216 (+) Length   328 a.a.
NCBI ID   WP_209553010.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5118     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 33230..44216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4T92_RS00180 (J4T92_00180) panD 34636..34989 (+) 354 WP_209553007.1 aspartate 1-decarboxylase -
  J4T92_RS00185 (J4T92_00185) - 34992..35294 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  J4T92_RS00190 (J4T92_00190) - 35294..36298 (+) 1005 WP_209553430.1 PDZ domain-containing protein -
  J4T92_RS00195 (J4T92_00195) comB6 36306..37361 (+) 1056 WP_209553008.1 P-type conjugative transfer protein TrbL Machinery gene
  J4T92_RS00200 (J4T92_00200) comB7 37377..37490 (+) 114 WP_001217877.1 hypothetical protein Machinery gene
  J4T92_RS00205 (J4T92_00205) comB8 37487..38230 (+) 744 WP_209553009.1 virB8 family protein Machinery gene
  J4T92_RS00210 (J4T92_00210) comB9 38230..39216 (+) 987 WP_209553010.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  J4T92_RS00215 (J4T92_00215) comB10 39209..40339 (+) 1131 WP_209553011.1 DNA type IV secretion system protein ComB10 Machinery gene
  J4T92_RS00220 (J4T92_00220) - 40409..41821 (+) 1413 WP_209553012.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  J4T92_RS00225 (J4T92_00225) gmd 41863..43008 (+) 1146 WP_209553013.1 GDP-mannose 4,6-dehydratase -
  J4T92_RS00230 (J4T92_00230) - 43001..43933 (+) 933 WP_209553014.1 GDP-L-fucose synthase -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 37950.80 Da        Isoelectric Point: 9.7122

>NTDB_id=549581 J4T92_RS00210 WP_209553010.1 38230..39216(+) (comB9) [Helicobacter pylori strain MT5118]
MRKVLYALMGFLLAFSVLKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNINYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYTNAFIKPQKENQENMAENAPKDAQKNNKPLKEEKEETKEKEEETIIIGDNTNAMKIIKKDIQKGYKALKSSQRKWYCL
WACSKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIR
FIKRSKGE

Nucleotide


Download         Length: 987 bp        

>NTDB_id=549581 J4T92_RS00210 WP_209553010.1 38230..39216(+) (comB9) [Helicobacter pylori strain MT5118]
ATGCGTAAGGTTTTATACGCTCTCATGGGTTTTTTGTTGGCTTTTAGCGTTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTAATTATTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTGGGGGATAAGGTGGGTTTTGATGCGAAAATTTTAGAAAG
CAATGATCGCATTTTACTCATCAAACCCTTACAAATCGGCGTGGATTCTAATATCAGCGTGATAGATAGTGAAGGCAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTTATAGAAGATAAAAAC
TATTACACTAACGCTTTTATCAAGCCCCAAAAAGAAAATCAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCAAAA
AAATAATAAGCCCCTAAAAGAAGAAAAAGAAGAAACTAAAGAAAAAGAAGAAGAGACTATAATTATTGGCGATAACACCA
ACGCGATGAAAATTATTAAAAAAGACATCCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTA
TGGGCTTGTTCTAAAAAATCCAAACTCTCCTTAATGCCTAAAGAAATCTTTAACGACAAACAATTCACTTATTTCAAATT
TGACAAAAGATTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAATCCGGTGAATACAAGGA
TTGTGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGTTGGGTAAGGATTATCTGTGTATCCGT
TTTATCAAAAGGAGCAAAGGTGAATAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

92.073

100

0.921