Detailed information NTG0549578

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: J4T92_RS00195
• Genome accession: NZ_CP071975
• Coordinates: 36306..37361 (+)
• Length: 351 a.a.
• NCBI ID: WP_209553008.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5118
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31306..42361

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4T92_RS00165 (J4T92_00165)	-	31728..32141 (+)	414	WP_001023005.1	universal stress protein	-
J4T92_RS00170 (J4T92_00170)	-	32143..32418 (+)	276	WP_000781795.1	ATP-dependent Clp protease adaptor ClpS	-
J4T92_RS00175 (J4T92_00175)	-	32418..34646 (+)	2229	WP_209553006.1	ATP-dependent Clp protease ATP-binding subunit	-
J4T92_RS00180 (J4T92_00180)	panD	34636..34989 (+)	354	WP_209553007.1	aspartate 1-decarboxylase	-
J4T92_RS00185 (J4T92_00185)	-	34992..35294 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
J4T92_RS00190 (J4T92_00190)	-	35294..36298 (+)	1005	WP_209553430.1	PDZ domain-containing protein	-
J4T92_RS00195 (J4T92_00195)	comB6	36306..37361 (+)	1056	WP_209553008.1	P-type conjugative transfer protein TrbL	Machinery gene
J4T92_RS00200 (J4T92_00200)	comB7	37377..37490 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
J4T92_RS00205 (J4T92_00205)	comB8	37487..38230 (+)	744	WP_209553009.1	virB8 family protein	Machinery gene
J4T92_RS00210 (J4T92_00210)	comB9	38230..39216 (+)	987	WP_209553010.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
J4T92_RS00215 (J4T92_00215)	comB10	39209..40339 (+)	1131	WP_209553011.1	DNA type IV secretion system protein ComB10	Machinery gene
J4T92_RS00220 (J4T92_00220)	-	40409..41821 (+)	1413	WP_209553012.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39675.54 Da
• Isoelectric Point: 8.8283

>NTDB_id=549578 J4T92_RS00195 WP_209553008.1 36306..37361(+) (comB6) [Helicobacter pylori strain MT5118]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALWFVGFFALFNY
ALKNPSRFYELFQNAIFIVPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEAHVWCSLGVLFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLTQSALQSLQHTTTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTIDTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=549578 J4T92_RS00195 WP_209553008.1 36306..37361(+) (comB6) [Helicobacter pylori strain MT5118]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAGCAGAATTTTTTCAGCGCTAGTGCGCTAACAGAAGCGTTATGGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGTGCCTAACATGATCGCGCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGCT
TCATTAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGCGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTTAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCCTTAATAGACGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATCGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTCAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCACTCAAAGCGCTTTGCAATCTTTGCAACATACCA
CAACCTCGCCCGCTCCTTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAGGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACCCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAGATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	93.732	100	0.937