Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   J5N61_RS10025 Genome accession   NZ_CP071973
Coordinates   2114866..2115573 (+) Length   235 a.a.
NCBI ID   WP_004915082.1    Uniprot ID   A0A8I0S549
Organism   Acinetobacter junii strain INC8271     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2109866..2120573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5N61_RS10005 (J5N61_10005) - 2110018..2110440 (-) 423 WP_212386908.1 hypothetical protein -
  J5N61_RS10010 (J5N61_10010) clpB 2110605..2113184 (-) 2580 WP_151830437.1 ATP-dependent chaperone ClpB -
  J5N61_RS10015 (J5N61_10015) - 2113446..2114244 (+) 799 Protein_1950 peptidoglycan DD-metalloendopeptidase family protein -
  J5N61_RS10020 (J5N61_10020) - 2114290..2114718 (-) 429 WP_004953612.1 OsmC family protein -
  J5N61_RS10025 (J5N61_10025) crp 2114866..2115573 (+) 708 WP_004915082.1 cAMP-activated global transcriptional regulator CRP Regulator
  J5N61_RS10030 (J5N61_10030) - 2115777..2116556 (+) 780 WP_004915079.1 M48 family metallopeptidase -
  J5N61_RS10035 (J5N61_10035) - 2116610..2118340 (-) 1731 WP_212386914.1 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha -
  J5N61_RS10040 (J5N61_10040) - 2118341..2119915 (-) 1575 WP_212386916.1 urea amidolyase family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26613.24 Da        Isoelectric Point: 4.7528

>NTDB_id=549551 J5N61_RS10025 WP_004915082.1 2114866..2115573(+) (crp) [Acinetobacter junii strain INC8271]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEKNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLEENAFTEEEFDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=549551 J5N61_RS10025 WP_004915082.1 2114866..2115573(+) (crp) [Acinetobacter junii strain INC8271]
ATGACTTCAAATTTTTCACAGCTTAGCACTGATGCTTTATCACCAGGTCAATTACCTGAATCTGTTAAAGCCTTGCTAAA
ACGTGCTCATATTAACAGATACCCTAAACGCACCACGATTGTTGACGCTGGAACGGAATCAAAATCACTGTATTTAATAT
TAAAAGGTTCGGTGTCAATTATTTTACGTGAAGATGATGAACGTGAGATTGTCGTTGCATATTTAAACCCTGGGGATTTC
TTTGGCGAAATGGGTCTTTTTGAGAAGAACCCACAACGTACTGCGGAAGTAAGAACTCGTGATGTTTGTGAAATCGCTGA
GATTTCATATGACAACTTCCACGAATTAAGCAAACAATATCCTGATTTGAGCTACGCAGTATTTGCTCAATTAGTTCGCC
GCTTAAAAAATACAACACGTAAAGTAACTGACCTTGCATTTATTGATGTATCTGGTCGTATTGCACGTTGTTTAATTGAT
TTATCTTCGCAACCAGAAGCAATGATCTTACCAAATGGTCGTCAAATCCGTATTACTCGCCAAGAGATTGGTCGTATTGT
CGGTTGTTCACGTGAAATGGTTGGACGTGTTCTTAAGACGCTTGAAGATCAAGGCATGATTCAAACTGATGGTAAAGCAA
TTTTAATTTTTGATACGTCATTAGAAGAAAATGCATTTACTGAAGAAGAGTTTGACGACGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

96.17

100

0.962
  crp Vibrio cholerae strain A1552

47.826

88.085

0.421
  crp Haemophilus influenzae Rd KW20

49.223

82.128

0.404