Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   J4048_RS12695 Genome accession   NZ_CP071970
Coordinates   2635145..2635480 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain XJ5     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2630145..2640480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4048_RS12675 (J4048_12675) gcvT 2630751..2631851 (-) 1101 WP_031378949.1 glycine cleavage system aminomethyltransferase GcvT -
  J4048_RS12680 (J4048_12680) - 2632275..2633945 (+) 1671 WP_031378948.1 SNF2-related protein -
  J4048_RS12685 (J4048_12685) - 2633967..2634761 (+) 795 WP_007408330.1 YqhG family protein -
  J4048_RS12690 (J4048_12690) sinI 2634938..2635111 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  J4048_RS12695 (J4048_12695) sinR 2635145..2635480 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  J4048_RS12700 (J4048_12700) - 2635528..2636313 (-) 786 WP_007408329.1 TasA family protein -
  J4048_RS12705 (J4048_12705) - 2636378..2636962 (-) 585 WP_015240205.1 signal peptidase I -
  J4048_RS12710 (J4048_12710) tapA 2636934..2637605 (-) 672 WP_031378945.1 amyloid fiber anchoring/assembly protein TapA -
  J4048_RS12715 (J4048_12715) - 2637864..2638193 (+) 330 WP_039254490.1 DUF3889 domain-containing protein -
  J4048_RS12720 (J4048_12720) - 2638233..2638412 (-) 180 WP_003153093.1 YqzE family protein -
  J4048_RS12725 (J4048_12725) comGG 2638469..2638846 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  J4048_RS12730 (J4048_12730) comGF 2638847..2639347 (-) 501 WP_257738552.1 competence type IV pilus minor pilin ComGF -
  J4048_RS12735 (J4048_12735) comGE 2639256..2639570 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  J4048_RS12740 (J4048_12740) comGD 2639554..2639991 (-) 438 WP_015417817.1 competence type IV pilus minor pilin ComGD Machinery gene
  J4048_RS12745 (J4048_12745) comGC 2639981..2640289 (-) 309 WP_015417818.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=549496 J4048_RS12695 WP_003153104.1 2635145..2635480(+) (sinR) [Bacillus amyloliquefaciens strain XJ5]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=549496 J4048_RS12695 WP_003153104.1 2635145..2635480(+) (sinR) [Bacillus amyloliquefaciens strain XJ5]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991