Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   J4048_RS02030 Genome accession   NZ_CP071970
Coordinates   442603..443556 (+) Length   317 a.a.
NCBI ID   WP_015239156.1    Uniprot ID   A0AAP3YGS2
Organism   Bacillus amyloliquefaciens strain XJ5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 437603..448556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4048_RS02005 (J4048_02005) - 437651..439084 (+) 1434 WP_015416810.1 HAMP domain-containing sensor histidine kinase -
  J4048_RS02010 (J4048_02010) rapC 439237..440385 (+) 1149 WP_033575082.1 Rap family tetratricopeptide repeat protein Regulator
  J4048_RS02015 (J4048_02015) phrC 440369..440488 (+) 120 WP_033575081.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  J4048_RS02020 (J4048_02020) - 440635..440730 (-) 96 WP_076983091.1 YjcZ family sporulation protein -
  J4048_RS02025 (J4048_02025) - 440825..442189 (-) 1365 WP_033575080.1 aspartate kinase -
  J4048_RS02030 (J4048_02030) ceuB 442603..443556 (+) 954 WP_015239156.1 ABC transporter permease Machinery gene
  J4048_RS02035 (J4048_02035) - 443546..444493 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  J4048_RS02040 (J4048_02040) - 444487..445245 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  J4048_RS02045 (J4048_02045) - 445267..446211 (+) 945 WP_007410275.1 siderophore ABC transporter substrate-binding protein -
  J4048_RS02050 (J4048_02050) - 446253..447677 (-) 1425 WP_033575079.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34945.24 Da        Isoelectric Point: 9.6741

>NTDB_id=549467 J4048_RS02030 WP_015239156.1 442603..443556(+) (ceuB) [Bacillus amyloliquefaciens strain XJ5]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=549467 J4048_RS02030 WP_015239156.1 442603..443556(+) (ceuB) [Bacillus amyloliquefaciens strain XJ5]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCGGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGATTGGGCAAGGCTCGGAATCTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTTCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATATGACCTGATC
CAAAACCTGTCGTCTTGGCTGCAGGGAGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATATAAACGCGTCGTTAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTGCTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGGATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

99.685

0.536