Detailed information NTG0549465

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: J4048_RS02010
• Genome accession: NZ_CP071970
• Coordinates: 439237..440385 (+)
• Length: 382 a.a.
• NCBI ID: WP_033575082.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain XJ5
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 434237..445385

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4048_RS01990 (J4048_01990)	-	434635..435318 (-)	684	WP_033575085.1	ABC transporter ATP-binding protein	-
J4048_RS01995 (J4048_01995)	-	435333..436769 (-)	1437	WP_033575084.1	ABC transporter permease	-
J4048_RS02000 (J4048_02000)	-	436981..437664 (+)	684	WP_007410267.1	response regulator transcription factor	-
J4048_RS02005 (J4048_02005)	-	437651..439084 (+)	1434	WP_015416810.1	HAMP domain-containing sensor histidine kinase	-
J4048_RS02010 (J4048_02010)	rapC	439237..440385 (+)	1149	WP_033575082.1	Rap family tetratricopeptide repeat protein	Regulator
J4048_RS02015 (J4048_02015)	phrC	440369..440488 (+)	120	WP_033575081.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
J4048_RS02020 (J4048_02020)	-	440635..440730 (-)	96	WP_076983091.1	YjcZ family sporulation protein	-
J4048_RS02025 (J4048_02025)	-	440825..442189 (-)	1365	WP_033575080.1	aspartate kinase	-
J4048_RS02030 (J4048_02030)	ceuB	442603..443556 (+)	954	WP_015239156.1	ABC transporter permease	Machinery gene
J4048_RS02035 (J4048_02035)	-	443546..444493 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
J4048_RS02040 (J4048_02040)	-	444487..445245 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45491.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=549465 J4048_RS02010 WP_033575082.1 439237..440385(+) (rapC) [Bacillus amyloliquefaciens strain XJ5]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISSCFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=549465 J4048_RS02010 WP_033575082.1 439237..440385(+) (rapC) [Bacillus amyloliquefaciens strain XJ5]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGATTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTATTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACTTTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTATACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCTCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568