Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   J4048_RS02015 Genome accession   NZ_CP071970
Coordinates   440369..440488 (+) Length   39 a.a.
NCBI ID   WP_033575081.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain XJ5     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 435369..445488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4048_RS02000 (J4048_02000) - 436981..437664 (+) 684 WP_007410267.1 response regulator transcription factor -
  J4048_RS02005 (J4048_02005) - 437651..439084 (+) 1434 WP_015416810.1 HAMP domain-containing sensor histidine kinase -
  J4048_RS02010 (J4048_02010) rapC 439237..440385 (+) 1149 WP_033575082.1 Rap family tetratricopeptide repeat protein Regulator
  J4048_RS02015 (J4048_02015) phrC 440369..440488 (+) 120 WP_033575081.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  J4048_RS02020 (J4048_02020) - 440635..440730 (-) 96 WP_076983091.1 YjcZ family sporulation protein -
  J4048_RS02025 (J4048_02025) - 440825..442189 (-) 1365 WP_033575080.1 aspartate kinase -
  J4048_RS02030 (J4048_02030) ceuB 442603..443556 (+) 954 WP_015239156.1 ABC transporter permease Machinery gene
  J4048_RS02035 (J4048_02035) - 443546..444493 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  J4048_RS02040 (J4048_02040) - 444487..445245 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4214.93 Da        Isoelectric Point: 8.0284

>NTDB_id=549466 J4048_RS02015 WP_033575081.1 440369..440488(+) (phrC) [Bacillus amyloliquefaciens strain XJ5]
MKLKSKWFVICLAAAAIFTVTGAGQTDQADFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=549466 J4048_RS02015 WP_033575081.1 440369..440488(+) (phrC) [Bacillus amyloliquefaciens strain XJ5]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGACTTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

72.5

100

0.744