Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   J4048_RS01810 Genome accession   NZ_CP071970
Coordinates   378041..378439 (-) Length   132 a.a.
NCBI ID   WP_208557115.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain XJ5     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 373041..383439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4048_RS01785 (J4048_01785) - 373213..374415 (+) 1203 WP_015416778.1 GTP-binding protein -
  J4048_RS01790 (J4048_01790) - 374480..375616 (+) 1137 WP_015416779.1 zinc-dependent alcohol dehydrogenase -
  J4048_RS01795 (J4048_01795) - 375631..376065 (+) 435 WP_033575151.1 RDD family protein -
  J4048_RS01800 (J4048_01800) - 376137..376460 (+) 324 WP_007409357.1 YckD family protein -
  J4048_RS01805 (J4048_01805) - 376564..378000 (+) 1437 WP_015416781.1 family 1 glycosylhydrolase -
  J4048_RS01810 (J4048_01810) nin/comJ 378041..378439 (-) 399 WP_208557115.1 competence protein ComJ Regulator
  J4048_RS01815 (J4048_01815) nucA/comI 378460..378897 (-) 438 WP_015416783.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  J4048_RS01820 (J4048_01820) hxlB 379255..379812 (-) 558 WP_015416784.1 6-phospho-3-hexuloisomerase -
  J4048_RS01825 (J4048_01825) hxlA 379809..380444 (-) 636 WP_015416785.1 3-hexulose-6-phosphate synthase -
  J4048_RS01830 (J4048_01830) - 380676..381038 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14979.96 Da        Isoelectric Point: 4.9711

>NTDB_id=549463 J4048_RS01810 WP_208557115.1 378041..378439(-) (nin/comJ) [Bacillus amyloliquefaciens strain XJ5]
MNKSWKPQELTISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFCHIPKGRYSLTCYSVPAEISDLHADTYIIDAASM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=549463 J4048_RS01810 WP_208557115.1 378041..378439(-) (nin/comJ) [Bacillus amyloliquefaciens strain XJ5]
TTGAATAAATCATGGAAACCGCAAGAACTGACCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTGTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCTCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75

100

0.75