Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J5F39_RS01355 Genome accession   NZ_CP071936
Coordinates   273172..273972 (+) Length   266 a.a.
NCBI ID   WP_283492036.1    Uniprot ID   -
Organism   Helicobacter pylori strain MTT03     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 268172..278972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5F39_RS01320 pseH 268673..269215 (+) 543 WP_283492034.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  J5F39_RS01325 - 269148..270086 (-) 939 WP_283492035.1 tetraacyldisaccharide 4'-kinase -
  J5F39_RS01330 - 270073..270864 (-) 792 WP_001168311.1 NAD+ synthase -
  J5F39_RS01340 ilvC 271113..272105 (+) 993 WP_025447442.1 ketol-acid reductoisomerase -
  J5F39_RS01345 minD 272129..272935 (+) 807 WP_001019048.1 septum site-determining protein MinD -
  J5F39_RS01350 minE 272932..273165 (+) 234 WP_000051418.1 cell division topological specificity factor MinE -
  J5F39_RS01355 dprA 273172..273972 (+) 801 WP_283492036.1 DNA-processing protein DprA Machinery gene
  J5F39_RS01360 dprB 273969..274373 (+) 405 WP_078260968.1 Holliday junction resolvase RuvX Machinery gene
  J5F39_RS01365 - 274506..275177 (+) 672 WP_283492037.1 tetratricopeptide repeat protein -
  J5F39_RS01370 - 275292..275630 (+) 339 WP_078249626.1 hypothetical protein -
  J5F39_RS01375 - 275614..276174 (+) 561 WP_001035890.1 hypothetical protein -
  J5F39_RS01380 - 276351..277232 (-) 882 WP_283492038.1 RluA family pseudouridine synthase -
  J5F39_RS01385 recJ 277232..278782 (-) 1551 WP_283492039.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29871.81 Da        Isoelectric Point: 8.5818

>NTDB_id=549283 J5F39_RS01355 WP_283492036.1 273172..273972(+) (dprA) [Helicobacter pylori strain MTT03]
MKSNFQYSALENIPKAFDILKDPPKKLYCVGDTKLLDAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPTTIMLSPCSLDFIYPTNNHKVIQEIAQKGLILSEYEKDFMPIKGSFLARNRLVIALSDVVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMKDEFLEYCAKNPSYEEAY
LRFGDKLLEYELLGKIKRINHLVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=549283 J5F39_RS01355 WP_283492036.1 273172..273972(+) (dprA) [Helicobacter pylori strain MTT03]
ATGAAAAGTAATTTCCAATACAGCGCACTAGAGAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAGCT
CTATTGTGTGGGCGATACCAAGCTTTTAGATGCGCCTTTAAAAGTGGCTATCATAGGCACAAGAAGACCCACCCCTTACA
GCAAGCAACACACGATCACTCTAGCTAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGGGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAACAACGATCATGCTTTCGCCTTGCAGTTTGGATTTCATCTATCCTACAAA
CAACCATAAAGTGATCCAAGAAATCGCACAAAAGGGCTTGATTTTAAGCGAATATGAAAAGGATTTCATGCCCATTAAAG
GCTCTTTTTTAGCGAGAAACCGCCTGGTGATCGCTTTAAGCGATGTAGTGATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGCGCGAGATTAGCCCAAAAATACCAAAAACCCTTGTTTGTTTTACCCCAACGCTTGAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACT
ACCATTTAAAAGAAATGCCTGAAATGAAAGATGAATTTTTAGAATATTGCGCTAAAAACCCTAGCTATGAAGAGGCGTAT
CTCAGATTTGGGGATAAGCTTTTAGAATACGAGCTTTTGGGTAAAATCAAGCGCATCAATCATCTCGTGGTGTTAGCATG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

96.992

100

0.97
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.611

81.203

0.395