Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   J5F39_RS01360 Genome accession   NZ_CP071936
Coordinates   273969..274373 (+) Length   134 a.a.
NCBI ID   WP_078260968.1    Uniprot ID   -
Organism   Helicobacter pylori strain MTT03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 268969..279373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5F39_RS01325 - 269148..270086 (-) 939 WP_283492035.1 tetraacyldisaccharide 4'-kinase -
  J5F39_RS01330 - 270073..270864 (-) 792 WP_001168311.1 NAD+ synthase -
  J5F39_RS01340 ilvC 271113..272105 (+) 993 WP_025447442.1 ketol-acid reductoisomerase -
  J5F39_RS01345 minD 272129..272935 (+) 807 WP_001019048.1 septum site-determining protein MinD -
  J5F39_RS01350 minE 272932..273165 (+) 234 WP_000051418.1 cell division topological specificity factor MinE -
  J5F39_RS01355 dprA 273172..273972 (+) 801 WP_283492036.1 DNA-processing protein DprA Machinery gene
  J5F39_RS01360 dprB 273969..274373 (+) 405 WP_078260968.1 Holliday junction resolvase RuvX Machinery gene
  J5F39_RS01365 - 274506..275177 (+) 672 WP_283492037.1 tetratricopeptide repeat protein -
  J5F39_RS01370 - 275292..275630 (+) 339 WP_078249626.1 hypothetical protein -
  J5F39_RS01375 - 275614..276174 (+) 561 WP_001035890.1 hypothetical protein -
  J5F39_RS01380 - 276351..277232 (-) 882 WP_283492038.1 RluA family pseudouridine synthase -
  J5F39_RS01385 recJ 277232..278782 (-) 1551 WP_283492039.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15218.65 Da        Isoelectric Point: 8.7220

>NTDB_id=549284 J5F39_RS01360 WP_078260968.1 273969..274373(+) (dprB) [Helicobacter pylori strain MTT03]
MILACDVGLKRIGIAALLNGVVLPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=549284 J5F39_RS01360 WP_078260968.1 273969..274373(+) (dprB) [Helicobacter pylori strain MTT03]
ATGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGCGCTTTTAAACGGCGTTGTCTTGCCCTTAGAAGC
GATTTTACGCCATAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACGAACGCACGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCTTATGAAAATTTAGAGCATTTGGGTAAGAAAAATAAGCGGCT
CGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATTTTAGAGCGCTATTGCCAACAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

97.761

100

0.978