Detailed information NTG0549282

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: J5F39_RS01070
• Genome accession: NZ_CP071936
• Coordinates: 218029..219159 (+)
• Length: 376 a.a.
• NCBI ID: WP_283492016.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MTT03
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 213029..224159

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5F39_RS01035	panD	213459..213812 (+)	354	WP_077642785.1	aspartate 1-decarboxylase	-
J5F39_RS01040	-	213815..214117 (+)	303	WP_000347931.1	YbaB/EbfC family nucleoid-associated protein	-
J5F39_RS01045	-	214117..215121 (+)	1005	WP_283492255.1	PDZ domain-containing protein	-
J5F39_RS01050	comB6	215129..216184 (+)	1056	WP_283492256.1	P-type conjugative transfer protein TrbL	Machinery gene
J5F39_RS01055	comB7	216200..216322 (+)	123	WP_283492014.1	comB7 lipoprotein	Machinery gene
J5F39_RS01060	comB8	216319..217062 (+)	744	WP_283492015.1	virB8 family protein	Machinery gene
J5F39_RS01065	comB9	217062..218036 (+)	975	WP_078290899.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
J5F39_RS01070	comB10	218029..219159 (+)	1131	WP_283492016.1	DNA type IV secretion system protein ComB10	Machinery gene
J5F39_RS01075	-	219229..220641 (+)	1413	WP_283492017.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
J5F39_RS01080	gmd	220682..221827 (+)	1146	WP_283492018.1	GDP-mannose 4,6-dehydratase	-
J5F39_RS01085	-	221820..222752 (+)	933	WP_078240863.1	GDP-L-fucose synthase	-
J5F39_RS07965	-	222777..222907 (-)	131	Protein_209	anthranilate synthase component I	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41962.50 Da
• Isoelectric Point: 9.8253

>NTDB_id=549282 J5F39_RS01070 WP_283492016.1 218029..219159(+) (comB10) [Helicobacter pylori strain MTT03]
MNKWIKGAVVFVGGFITITSISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPIDPKTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1131 bp

>NTDB_id=549282 J5F39_RS01070 WP_283492016.1 218029..219159(+) (comB10) [Helicobacter pylori strain MTT03]
GTGAATAAGTGGATTAAAGGGGCGGTTGTTTTTGTAGGGGGTTTTATAACGATTACAAGTATTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACCAACACGGAAAGCTCCAAAGACGCCACCATTAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATCCAAAAAC
AACCCCCCCTAAAAAAGATTTTTCTTTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATTGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCTTTTTTGATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTTGCAAGCATGGGCAAAGCCGTCTTAATCCCTA
AAGGCTCTAAAGTTATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGTCGCATC
ATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGCTTAGTGGGGGA
ATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTCGTGAATCAAATTTTAAGAGACAAGAGTAAGATCGCCCCCATTGTGGTGATTAG
AGAGGGAAGCAGGGTTTTCATTTCGCCCAATACTGATATATTCTTCCCTATACCCAGAGAGAATGAAGTCATCGCAGAGT
TTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (171-362)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.543	100	0.965