Detailed information NTG0549278

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: J5F39_RS01050
• Genome accession: NZ_CP071936
• Coordinates: 215129..216184 (+)
• Length: 351 a.a.
• NCBI ID: WP_283492256.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MTT03
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 210129..221184

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5F39_RS01020	-	210538..210951 (+)	414	WP_001023008.1	universal stress protein	-
J5F39_RS01025	-	210966..211241 (+)	276	WP_078245951.1	ATP-dependent Clp protease adaptor ClpS	-
J5F39_RS01030	-	211241..213469 (+)	2229	WP_283492013.1	ATP-dependent Clp protease ATP-binding subunit	-
J5F39_RS01035	panD	213459..213812 (+)	354	WP_077642785.1	aspartate 1-decarboxylase	-
J5F39_RS01040	-	213815..214117 (+)	303	WP_000347931.1	YbaB/EbfC family nucleoid-associated protein	-
J5F39_RS01045	-	214117..215121 (+)	1005	WP_283492255.1	PDZ domain-containing protein	-
J5F39_RS01050	comB6	215129..216184 (+)	1056	WP_283492256.1	P-type conjugative transfer protein TrbL	Machinery gene
J5F39_RS01055	comB7	216200..216322 (+)	123	WP_283492014.1	comB7 lipoprotein	Machinery gene
J5F39_RS01060	comB8	216319..217062 (+)	744	WP_283492015.1	virB8 family protein	Machinery gene
J5F39_RS01065	comB9	217062..218036 (+)	975	WP_078290899.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
J5F39_RS01070	comB10	218029..219159 (+)	1131	WP_283492016.1	DNA type IV secretion system protein ComB10	Machinery gene
J5F39_RS01075	-	219229..220641 (+)	1413	WP_283492017.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39759.76 Da
• Isoelectric Point: 9.0413

>NTDB_id=549278 J5F39_RS01050 WP_283492256.1 215129..216184(+) (comB6) [Helicobacter pylori strain MTT03]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPLRFYELFQNAIFIAPNMIAQSLSQSLSNFSNHVLSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKNWRSVVIICLKKCFALGFYKPFLLLVGFLNVSVTKALMDASMQEKQDLSFLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTLSAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=549278 J5F39_RS01050 WP_283492256.1 215129..216184(+) (comB6) [Helicobacter pylori strain MTT03]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTAAAAAACCCTTTGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCACCTAACATGATTGCGCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGTGCTTTCTTTAGATTTTATCTTTAATCATGGTTTCTATGCCCTTAGCT
TTATTAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATCTTGCAAGCGCTTTTTTTGAGCGTTTTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
TAAAAACTGGAGGAGCGTTGTGATTATATGCCTTAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCGTTAATGGACGCTAGCATGCAAGAAAAACAAGACTTAAGCTTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATCGGCGTACCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCTCTCAATTCTTTACAATATATCA
CGACTTTATCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	94.302	100	0.943